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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423732
Gene symbol: Atp6v1a
Gene name: ATPase, H+ transporting, lysosomal V1 subunit A
Probe: EB1158 probe 844
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EB1158; Specimen B473: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_B473_5_3A
TS22: central nervous system Strong Regionally restricted Embryo_B473_5_3A
TS22: telencephalon Strong Regionally restricted Embryo_B473_5_3A
TS22: cerebral cortex Strong Regionally restricted Embryo_B473_5_3A
TS22: neocortex Strong Regionally restricted Embryo_B473_5_3A
TS22: olfactory cortex Strong Regionally restricted Embryo_B473_5_3B
TS22: main olfactory bulb Strong Regionally restricted Embryo_B473_5_3B
TS22: piriform cortex Absent
TS22: hippocampus Strong Regionally restricted Embryo_B473_5_3A
TS22: basal ganglia Moderate Regionally restricted Embryo_B473_5_3A
TS22: corpus striatum Weak Regionally restricted Embryo_B473_5_5A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Regionally restricted Embryo_B473_5_3A
TS22: amygdala Weak Regionally restricted Embryo_B473_5_4B
TS22: telencephalon septum Weak Regionally restricted Embryo_B473_5_5A
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_B473_5_4A
TS22: thalamus Moderate Regionally restricted Embryo_B473_5_4A
TS22: hypothalamus Strong Regionally restricted Embryo_B473_5_4A
TS22: midbrain Strong Regionally restricted Embryo_B473_5_3B
TS22: pretectum Moderate Regionally restricted Embryo_B473_5_4A
TS22: superior colliculus Moderate Regionally restricted Embryo_B473_5_2C
TS22: inferior colliculus Moderate Regionally restricted Embryo_B473_5_2C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_B473_5_3B
TS22: hindbrain Strong Regionally restricted Embryo_B473_5_3B
TS22: cerebellum Moderate Regionally restricted Embryo_B473_5_2C
TS22: pons Strong Regionally restricted Embryo_B473_5_2C
TS22: medulla oblongata Strong Regionally restricted Embryo_B473_5_3B
TS22: spinal cord Strong Regionally restricted Embryo_B473_5_3B
TS22: choroid plexus Strong Regionally restricted Embryo_B473_5_3A
TS22: meninges Absent
TS22: peripheral nervous system Strong Ubiquitous Embryo_B473_5_2C
TS22: cranial ganglion Moderate Ubiquitous Embryo_B473_5_2B
TS22: dorsal root ganglion Strong Ubiquitous Embryo_B473_5_2C
TS22: eye Strong Regionally restricted Embryo_B473_5_1A
TS22: retina Strong Regionally restricted Embryo_B473_5_1A
TS22: lens Weak Regionally restricted Embryo_B473_5_1B
TS22: cornea Weak Regionally restricted Embryo_B473_5_1A
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_B473_5_3A
TS22: olfactory epithelium Strong Regionally restricted Embryo_B473_5_3A
TS22: ear Moderate Regionally restricted Embryo_B473_5_2C
TS22: inner ear Moderate Regionally restricted Embryo_B473_5_2C
TS22: cochlea Moderate Regionally restricted Embryo_B473_5_2C
TS22: inner ear labyrinth Weak Regionally restricted Embryo_B473_5_5A
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_B473_5_3A Expression was strong in the digestive system.
TS22: intestine Absent
TS22: salivary gland Strong Regionally restricted Embryo_B473_5_3A
TS22: tongue Weak Regionally restricted Embryo_B473_5_4A
TS22: tooth Absent
TS22: palatal shelf Weak Regionally restricted Embryo_B473_5_4A
TS22: esophagus Weak Regionally restricted Embryo_B473_5_3B
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_B473_5_2A
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Strong Regionally restricted Embryo_B473_5_3A
TS22: lung Weak Regionally restricted Embryo_B473_5_2A
TS22: urinary system Weak Regionally restricted Embryo_B473_5_2B Expression was weak in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_B473_5_2B
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_B473_5_3C
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_B473_5_4A
TS22: genital tubercle Weak Regionally restricted Embryo_B473_5_4A
TS22: gonad Absent
TS22: gland Absent Expression was not detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Moderate Regionally restricted Embryo_B473_5_3B
TS22: heart Moderate Regionally restricted Embryo_B473_5_3B
TS22: heart atrium Moderate Regionally restricted Embryo_B473_5_3B
TS22: heart ventricle Weak Regionally restricted Embryo_B473_5_5A
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_B473_5_1A
TS22: face Weak Regionally restricted Embryo_B473_5_1A Expression was weak in the face/soft tissues.
TS22: facial bone primordium Moderate Regionally restricted Embryo_B473_5_4A
TS22: cranium Strong Regionally restricted Embryo_B473_5_1A Expression was strong in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Weak Regionally restricted Embryo_B473_5_4A
TS22: forelimb Weak Regionally restricted Embryo_B473_5_1A
TS22: hindlimb Weak Regionally restricted Embryo_B473_5_1A
TS22: integumental system Strong Regionally restricted Embryo_B473_5_6A
TS22: skin Absent
TS22: hair Weak Regionally restricted Embryo_B473_5_6A
TS22: vibrissa follicle Strong Regionally restricted Embryo_B473_5_6A Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory