About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423085
Gene symbol: Pdha1
Gene name: pyruvate dehydrogenase E1 alpha 1
Probe: EG25 probe 26
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EG25; Specimen G0043: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_G0043_6_3C
TS22: central nervous system Strong Regionally restricted Embryo_G0043_6_3D
TS22: telencephalon Strong Regionally restricted Embryo_G0043_6_3A
TS22: cerebral cortex Strong Regionally restricted Embryo_G0043_6_3A
TS22: neocortex Strong Regionally restricted Embryo_G0043_6_3A
TS22: olfactory cortex Strong Regionally restricted Embryo_G0043_6_3A
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Strong Regionally restricted Embryo_G0043_6_3A
TS22: basal ganglia Strong Regionally restricted Embryo_G0043_6_3A
TS22: corpus striatum Weak Regionally restricted Embryo_G0043_6_2A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Strong Regionally restricted Embryo_G0043_6_3A
TS22: pallidum Strong Regionally restricted Embryo_G0043_6_3A Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_G0043_6_3D
TS22: thalamus Strong Regionally restricted Embryo_G0043_6_3D
TS22: hypothalamus Absent
TS22: midbrain Strong Regionally restricted Embryo_G0043_6_4D
TS22: pretectum Absent
TS22: superior colliculus Strong Regionally restricted Embryo_G0043_6_4D
TS22: inferior colliculus Weak Regionally restricted Embryo_G0043_6_4D
TS22: midbrain tegmentum Strong Regionally restricted Embryo_G0043_6_4D
TS22: hindbrain Strong Regionally restricted Embryo_G0043_6_4C
TS22: cerebellum Weak Regionally restricted Embryo_G0043_6_4C
TS22: pons Weak Regionally restricted Embryo_G0043_6_4C
TS22: medulla oblongata Strong Regionally restricted Embryo_G0043_6_4C
TS22: spinal cord Strong Regionally restricted Embryo_G0043_6_3D
TS22: choroid plexus Moderate Regionally restricted Embryo_G0043_6_3A
TS22: meninges Absent
TS22: peripheral nervous system Strong Ubiquitous Embryo_G0043_6_3C
TS22: cranial ganglion Strong Ubiquitous Embryo_G0043_6_2A
TS22: dorsal root ganglion Strong Ubiquitous Embryo_G0043_6_3C
TS22: eye Strong Regionally restricted Embryo_G0043_6_2A
TS22: retina Absent
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Strong Regionally restricted Embryo_G0043_6_2A
TS22: nose Weak Regionally restricted Embryo_G0043_6_4B
TS22: olfactory epithelium Weak Regionally restricted Embryo_G0043_6_4B
TS22: ear Moderate Regionally restricted Embryo_G0043_6_4D
TS22: inner ear Moderate Regionally restricted Embryo_G0043_6_4D
TS22: cochlea Moderate Regionally restricted Embryo_G0043_6_4D
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_G0043_6_5C
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_G0043_6_2B Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_G0043_6_3B
TS22: salivary gland Strong Regionally restricted Embryo_G0043_6_2B
TS22: tongue Absent
TS22: tooth Weak Regionally restricted Embryo_G0043_6_3D
TS22: palatal shelf Weak Regionally restricted Embryo_G0043_6_3D
TS22: esophagus Weak Regionally restricted Embryo_G0043_6_4A
TS22: stomach Moderate Regionally restricted Embryo_G0043_6_2A
TS22: liver Moderate Regionally restricted Embryo_G0043_6_4A
TS22: respiratory system Strong Regionally restricted Embryo_G0043_6_3C
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Moderate Regionally restricted Embryo_G0043_6_4A
TS22: main bronchus Strong Regionally restricted Embryo_G0043_6_3C
TS22: lung Strong Regionally restricted Embryo_G0043_6_3C
TS22: urinary system Strong Regionally restricted Embryo_G0043_6_3C Expression was strong in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_G0043_6_3B
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Strong Regionally restricted Embryo_G0043_6_3C
TS22: genital tubercle Weak Regionally restricted Embryo_G0043_6_3C
TS22: gonad Absent
TS22: gland Absent Expression was not detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Moderate Regionally restricted Embryo_G0043_6_3D
TS22: heart Moderate Regionally restricted Embryo_G0043_6_3D
TS22: heart atrium Absent
TS22: heart ventricle Moderate Regionally restricted Embryo_G0043_6_3D
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_G0043_6_3D Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Regionally restricted Embryo_G0043_6_3D
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_G0043_6_2A
TS22: face Moderate Regionally restricted Embryo_G0043_6_1C Expression was detected in the face/soft tissues.
TS22: facial bone primordium Strong Regionally restricted Embryo_G0043_6_2D
TS22: cranium Strong Regionally restricted Embryo_G0043_6_1C Expression was strong in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Regionally restricted Embryo_G0043_6_3C
TS22: forelimb Strong Regionally restricted Embryo_G0043_6_1A
TS22: hindlimb Strong Regionally restricted Embryo_G0043_6_1A
TS22: integumental system Strong Regionally restricted Embryo_G0043_6_3C
TS22: skin Strong Regionally restricted Embryo_G0043_6_3C
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
10/22/2024
MGI 6.24 		The Jackson Laboratory