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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422753
Gene symbol: Col4a1
Gene name: collagen, type IV, alpha 1
Probe: Q71
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen HD18; Specimen C957: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C957_6_3B
TS22: central nervous system Strong Regionally restricted Embryo_C957_6_3B
TS22: telencephalon Strong Scattered Embryo_C957_6_3B
TS22: cerebral cortex Strong Scattered Embryo_C957_6_3B
TS22: neocortex Strong Scattered Embryo_C957_6_3B
TS22: olfactory cortex Strong Scattered Embryo_C957_6_3B
TS22: main olfactory bulb Strong Scattered Embryo_C957_6_3B
TS22: piriform cortex Strong Scattered Embryo_C957_6_1B
TS22: hippocampus Strong Scattered Embryo_C957_6_3B
TS22: basal ganglia Strong Scattered Embryo_C957_6_3A
TS22: corpus striatum Strong Scattered Embryo_C957_6_2B Expression was strong in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Strong Scattered Embryo_C957_6_2C
TS22: amygdala Strong Scattered Embryo_C957_6_1A
TS22: telencephalon septum Strong Scattered Embryo_C957_6_3B
TS22: pallidum Strong Scattered Embryo_C957_6_3A Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Scattered Embryo_C957_6_4B
TS22: thalamus Strong Scattered Embryo_C957_6_3D
TS22: hypothalamus Strong Scattered Embryo_C957_6_4B
TS22: midbrain Strong Scattered Embryo_C957_6_4C
TS22: pretectum Strong Scattered Embryo_C957_6_4C
TS22: superior colliculus Strong Scattered Embryo_C957_6_4C
TS22: inferior colliculus Strong Scattered Embryo_C957_6_4C
TS22: midbrain tegmentum Strong Scattered Embryo_C957_6_4C
TS22: hindbrain Strong Scattered Embryo_C957_6_3A
TS22: cerebellum Strong Scattered Embryo_C957_6_4D
TS22: pons Strong Scattered Embryo_C957_6_3A
TS22: medulla oblongata Strong Scattered
TS22: spinal cord Strong Scattered Embryo_C957_6_4C
TS22: choroid plexus Strong Regionally restricted Embryo_C957_6_4A
TS22: meninges Strong Ubiquitous Embryo_C957_6_3B
TS22: peripheral nervous system Strong Regionally restricted Embryo_C957_6_5A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C957_6_5A
TS22: dorsal root ganglion Strong Regionally restricted Embryo_C957_6_5A
TS22: eye Strong Regionally restricted Embryo_C957_6_1A
TS22: retina Weak Regionally restricted Embryo_C957_6_1B
TS22: lens Strong Regionally restricted Embryo_C957_6_1A
TS22: optic nerve Moderate Regionally restricted Embryo_C957_6_2B
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Strong Regionally restricted Embryo_C957_6_1B
TS22: inner ear Strong Regionally restricted Embryo_C957_6_1B
TS22: cochlea Strong Regionally restricted Embryo_C957_6_3A
TS22: inner ear labyrinth Strong Regionally restricted Embryo_C957_6_1B
TS22: middle ear Weak Regionally restricted Embryo_C957_6_1B
TS22: alimentary system Strong Regionally restricted Embryo_C957_6_1C Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C957_6_3A
TS22: salivary gland Moderate Regionally restricted Embryo_C957_6_5A
TS22: tongue Moderate Regionally restricted Embryo_C957_6_3A
TS22: tooth Weak Regionally restricted Embryo_C957_6_3B
TS22: palatal shelf Moderate Regionally restricted Embryo_C957_6_3C
TS22: esophagus Moderate Regionally restricted Embryo_C957_6_4A
TS22: stomach Strong Regionally restricted Embryo_C957_6_1C
TS22: liver Moderate Regionally restricted Embryo_C957_6_2B
TS22: respiratory system Moderate Regionally restricted Embryo_C957_6_2B
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Moderate Regionally restricted Embryo_C957_6_4A
TS22: main bronchus Moderate Regionally restricted Embryo_C957_6_4C
TS22: lung Moderate Regionally restricted Embryo_C957_6_2B
TS22: urinary system Strong Regionally restricted Embryo_C957_6_3A Expression was strong in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted
TS22: ureter Moderate Regionally restricted Embryo_C957_6_4C
TS22: bladder Moderate Regionally restricted Embryo_C957_6_4A
TS22: urethra Moderate Regionally restricted Embryo_C957_6_4A
TS22: reproductive system Strong Regionally restricted Embryo_C957_6_3A
TS22: genital tubercle Strong Regionally restricted Embryo_C957_6_3A
TS22: gonad Moderate Regionally restricted Embryo_C957_6_2B
TS22: gland Strong Regionally restricted Embryo_C957_6_3D Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C957_6_4C
TS22: pituitary gland Strong Scattered Embryo_C957_6_3D
TS22: pancreas Moderate Regionally restricted Embryo_C957_6_3B
TS22: adrenal gland Moderate Regionally restricted
TS22: cardiovascular system Moderate Regionally restricted Embryo_C957_6_3A
TS22: heart Moderate Regionally restricted Embryo_C957_6_3A
TS22: heart atrium Moderate Regionally restricted Embryo_C957_6_5C
TS22: heart ventricle Moderate Regionally restricted Embryo_C957_6_3A
TS22: blood vessel Strong Regionally restricted Embryo_C957_6_3D
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C957_6_1D Expression was detected in the immune system.
TS22: spleen primordium Moderate Regionally restricted Embryo_C957_6_1D
TS22: thymus primordium Moderate Regionally restricted Embryo_C957_6_3C
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C957_6_1B Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C957_6_1C
TS22: face Strong Regionally restricted Embryo_C957_6_3A Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Regionally restricted Embryo_C957_6_3B
TS22: hindlimb Strong Regionally restricted Embryo_C957_6_5C
TS22: integumental system Moderate Regionally restricted
TS22: skin Moderate Regionally restricted Embryo_C957_6_1C
TS22: hair Moderate Regionally restricted
TS22: vibrissa follicle Moderate Regionally restricted Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory