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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422117
Gene symbol: Cox4i1
Gene name: cytochrome c oxidase subunit 4I1
Probe: T36188
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EH3316; Specimen C3270: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C3270_5_5C
TS22: central nervous system Moderate Regionally restricted Embryo_C3270_5_4B
TS22: telencephalon Absent
TS22: cerebral cortex Absent
TS22: neocortex Absent
TS22: olfactory cortex Absent
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Absent
TS22: basal ganglia Absent
TS22: corpus striatum Absent Expression was not detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Moderate Regionally restricted Embryo_C3270_5_4B
TS22: pretectum Absent
TS22: superior colliculus Moderate Regionally restricted Embryo_C3270_5_4B
TS22: inferior colliculus Moderate Regionally restricted Embryo_C3270_5_4B
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C3270_5_4B
TS22: hindbrain Weak Regionally restricted Embryo_C3270_5_4B
TS22: cerebellum Absent
TS22: pons Absent
TS22: medulla oblongata Weak Regionally restricted Embryo_C3270_5_4B
TS22: spinal cord Moderate Regionally restricted Embryo_C3270_5_5A
TS22: choroid plexus Moderate Regionally restricted Embryo_C3270_5_4A
TS22: meninges Absent
TS22: peripheral nervous system Strong Ubiquitous Embryo_C3270_5_5C
TS22: cranial ganglion Strong Ubiquitous Embryo_C3270_5_3A
TS22: dorsal root ganglion Strong Ubiquitous Embryo_C3270_5_5C
TS22: eye Moderate Regionally restricted Embryo_C3270_5_1C
TS22: retina Weak Regionally restricted Embryo_C3270_5_1C
TS22: lens Moderate Regionally restricted Embryo_C3270_5_1C
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Moderate Ubiquitous Embryo_C3270_5_4A
TS22: olfactory epithelium Moderate Ubiquitous
TS22: ear Strong Regionally restricted Embryo_C3270_5_1A
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Strong Regionally restricted Embryo_C3270_5_1A
TS22: alimentary system Strong Regionally restricted Embryo_C3270_5_3A Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C3270_5_5A
TS22: salivary gland Strong Ubiquitous Embryo_C3270_5_3A
TS22: tongue Strong Regionally restricted Embryo_C3270_5_4C
TS22: tooth Moderate Regionally restricted Embryo_C3270_5_4B
TS22: palatal shelf Strong Regionally restricted Embryo_C3270_5_4B
TS22: esophagus Moderate Regionally restricted Embryo_C3270_5_4C
TS22: stomach Moderate Regionally restricted Embryo_C3270_5_1C
TS22: liver Strong Ubiquitous Embryo_C3270_5_3B
TS22: respiratory system Strong Regionally restricted Embryo_C3270_5_5A
TS22: pharynx Strong Regionally restricted Embryo_C3270_5_5A
TS22: larynx Strong Regionally restricted Embryo_C3270_5_4B
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C3270_5_3B
TS22: urinary system Moderate Regionally restricted Embryo_C3270_5_3A Expression was detected in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C3270_5_3A
TS22: ureter Absent
TS22: bladder Moderate Regionally restricted Embryo_C3270_5_4C
TS22: urethra Weak Regionally restricted Embryo_C3270_5_4C
TS22: reproductive system Moderate Regionally restricted Embryo_C3270_5_2C
TS22: genital tubercle Moderate Regionally restricted Embryo_C3270_5_5A
TS22: gonad Moderate Regionally restricted Embryo_C3270_5_2C
TS22: gland Strong Regionally restricted Embryo_C3270_5_3B Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Ubiquitous Embryo_C3270_5_4A
TS22: pituitary gland Absent
TS22: pancreas Strong Regionally restricted Embryo_C3270_5_3B
TS22: adrenal gland Moderate Ubiquitous Embryo_C3270_5_3A
TS22: cardiovascular system Moderate Regionally restricted Embryo_C3270_5_3A
TS22: heart Moderate Regionally restricted Embryo_C3270_5_3A
TS22: heart atrium Moderate Regionally restricted Embryo_C3270_5_4B
TS22: heart ventricle Moderate Regionally restricted Embryo_C3270_5_3A
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C3270_5_5A Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Ubiquitous Embryo_C3270_5_5A
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Ubiquitous Embryo_C3270_5_1A
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C3270_5_5A
TS22: forelimb Moderate Regionally restricted Embryo_C3270_5_1A
TS22: hindlimb Moderate Regionally restricted Embryo_C3270_5_1A
TS22: integumental system Strong Regionally restricted Embryo_C3270_5_3A
TS22: skin Moderate Regionally restricted Embryo_C3270_5_1A
TS22: hair Strong Regionally restricted Embryo_C3270_5_3A
TS22: vibrissa follicle Strong Regionally restricted Embryo_C3270_5_3A Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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