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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421471
Gene symbol: Rara
Gene name: retinoic acid receptor, alpha
Probe: MH1276 probe 1050
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH1276; Specimen C1578: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1578_2_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1578_2_3C
TS22: telencephalon Weak Regionally restricted Embryo_C1578_2_2A
TS22: cerebral cortex Weak Regionally restricted Embryo_C1578_2_2A
TS22: neocortex Weak Regionally restricted Embryo_C1578_2_2A
TS22: olfactory cortex Weak Regionally restricted Embryo_C1578_2_2A
TS22: main olfactory bulb Absent
TS22: piriform cortex Weak Regionally restricted Embryo_C1578_2_2A
TS22: hippocampus Weak Regionally restricted Embryo_C1578_2_1D
TS22: basal ganglia Weak Regionally restricted Embryo_C1578_2_2A
TS22: corpus striatum Weak Regionally restricted Embryo_C1578_2_2A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Weak Regionally restricted Embryo_C1578_2_3D
TS22: pallidum Weak Regionally restricted Embryo_C1578_2_3A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1578_2_4B
TS22: thalamus Absent
TS22: hypothalamus Weak Regionally restricted Embryo_C1578_2_4B
TS22: midbrain Weak Regionally restricted Embryo_C1578_2_4C
TS22: pretectum Weak Regionally restricted Embryo_C1578_2_4A
TS22: superior colliculus Absent
TS22: inferior colliculus Weak Regionally restricted Embryo_C1578_2_4C
TS22: midbrain tegmentum Absent
TS22: hindbrain Moderate Regionally restricted Embryo_C1578_2_2C
TS22: cerebellum Absent
TS22: pons Weak Regionally restricted Embryo_C1578_2_4A
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1578_2_2C
TS22: spinal cord Strong Regionally restricted Embryo_C1578_2_3C
TS22: choroid plexus Weak Regionally restricted Embryo_C1578_2_3B
TS22: meninges Weak Regionally restricted Embryo_C1578_2_5B
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1578_2_2A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1578_2_2A
TS22: dorsal root ganglion Weak Regionally restricted Embryo_C1578_2_3B
TS22: eye Weak Regionally restricted Embryo_C1578_2_1A
TS22: retina Weak Regionally restricted Embryo_C1578_2_1A
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_C1578_2_2C
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1578_2_2C
TS22: ear Moderate Regionally restricted Embryo_C1578_2_1A
TS22: inner ear Weak Regionally restricted Embryo_C1578_2_2A
TS22: cochlea Weak Regionally restricted Embryo_C1578_2_2A
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1578_2_1C
TS22: middle ear Moderate Regionally restricted Embryo_C1578_2_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C1578_2_3A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1578_2_3A
TS22: salivary gland Weak Regionally restricted Embryo_C1578_2_2D
TS22: tongue Weak Regionally restricted Embryo_C1578_2_3B
TS22: tooth Moderate Regionally restricted Embryo_C1578_2_3A
TS22: palatal shelf Moderate Regionally restricted Embryo_C1578_2_4B
TS22: esophagus Weak Regionally restricted Embryo_C1578_2_4A
TS22: stomach Moderate Regionally restricted Embryo_C1578_2_5C
TS22: liver Absent
TS22: respiratory system Weak Regionally restricted Embryo_C1578_2_2D
TS22: pharynx Weak Regionally restricted Embryo_C1578_2_3C
TS22: larynx Weak Regionally restricted Embryo_C1578_2_3C
TS22: trachea Weak Regionally restricted Embryo_C1578_2_3C
TS22: main bronchus Weak Regionally restricted Embryo_C1578_2_3B
TS22: lung Weak Regionally restricted Embryo_C1578_2_2D
TS22: urinary system Moderate Regionally restricted Embryo_C1578_2_2B Expression was detected in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1578_2_3C
TS22: urethra Weak Regionally restricted Embryo_C1578_2_3C
TS22: reproductive system Moderate Regionally restricted Embryo_C1578_2_2B
TS22: genital tubercle Moderate Regionally restricted Embryo_C1578_2_3A
TS22: gonad Moderate Regionally restricted Embryo_C1578_2_2B
TS22: gland Moderate Regionally restricted Embryo_C1578_2_4A Expression was detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Moderate Regionally restricted Embryo_C1578_2_4A
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1578_2_3C
TS22: heart Weak Regionally restricted Embryo_C1578_2_3C
TS22: heart atrium Weak Regionally restricted Embryo_C1578_2_3C
TS22: heart ventricle Weak Regionally restricted Embryo_C1578_2_3C
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C1578_2_1A
TS22: face Strong Regionally restricted Embryo_C1578_2_3A Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1578_2_1D
TS22: tail Moderate Regionally restricted Embryo_C1578_2_3A
TS22: forelimb Moderate Regionally restricted Embryo_C1578_2_1A
TS22: hindlimb Moderate Regionally restricted Embryo_C1578_2_6B
TS22: integumental system Strong Regionally restricted Embryo_C1578_2_1C
TS22: skin Moderate Regionally restricted Embryo_C1578_2_3C
TS22: hair Strong Regionally restricted Embryo_C1578_2_1C
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1578_2_1C Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory