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Gene Expression Data
Assay Details
Assay
Reference: J:76822 Anderson TR, et al., Differential Pax6 promoter activity and transcript expression during forebrain development. Mech Dev. 2002 Jun;114(1-2):171-5
Assay type: RNA in situ
MGI Accession ID: MGI:5302971
Gene symbol: Pax6
Gene name: paired box 6
Probe: Palpha probe
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1E: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future brain Absent 1E

Specimen 1J: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future brain Absent 1J

Specimen 1O: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Weak 1O

Specimen 2D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Weak 2D
TS23: cerebral cortex Weak 2D
TS23: pallidum Weak Regionally restricted 2D Expression is in the ventral pallidum.

Specimen 2H: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Weak 2H
TS23: thalamus Weak Regionally restricted 2H Expression is in the external medullary lamina.
TS23: epithalamus Weak Regionally restricted 2H Expression is in the intermediate zone of epithalamus.

Specimen 2L: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Moderate 2L Expression is in both the subiculum and Ammon's horn.

Specimen 2P: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: thalamus Weak Regionally restricted 2P Expression is in the lateral geniculate nucleus and the paraventricular nucleus.

Specimen Table 1 E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Moderate Regionally restricted Expression is in the ventral thalamus.
TS20: neocortex Trace
TS20: epithalamus Trace Regionally restricted Expression is in the intermediate zone.
TS20: forebrain Trace Regionally restricted Expression is in the hippocampus.
TS20: telencephalon Trace Regionally restricted Expression is absent in the basal telencephalon (amygdala).

Specimen Table 1 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: epithalamus Moderate
TS23: hippocampus Moderate
TS23: thalamus Moderate Regionally restricted Expression is in the ventral thalamus.
TS23: neocortex Moderate
TS23: pallidum Weak Regionally restricted Expression is in the ventral pallidum.

Specimen Table 1 E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: hippocampus Trace
TS25: neocortex Trace
TS25: thalamus Trace Regionally restricted Expression is in the ventral thalamus.
TS25: telencephalon Trace Regionally restricted Expression is in the neocortex and is absent in the ventral pallidum.
TS25: epithalamus Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/30/2025
MGI 6.24
The Jackson Laboratory