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Gene Expression Data
Assay Details
Assay
Reference: J:76822 Anderson TR, et al., Differential Pax6 promoter activity and transcript expression during forebrain development. Mech Dev. 2002 Jun;114(1-2):171-5
Assay type: RNA in situ
MGI Accession ID: MGI:5302970
Gene symbol: Pax6
Gene name: paired box 6
Probe: P1 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1D: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future hindbrain Present Regionally restricted 1D Expression is from the rostral margin of the hindbrain to the level of the open neural plate.
TS12: neural tube Present 1D

Specimen 1I: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future forebrain Present Regionally restricted 1I Expression is in broad domains.
TS15: future hindbrain Present 1I
TS15: future spinal cord Present 1I
TS15: future midbrain Absent 1I

Specimen 1N: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Present 1N
TS17: future spinal cord Present 1N

Specimen 2C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Strong 2C
TS23: cerebral cortex Strong 2C
TS23: pallidum Strong Regionally restricted 2C Expression is in the ventral pallidum.

Specimen 2G: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Present 2G
TS23: thalamus Present Regionally restricted 2G Expression is in the external medullary lamina.
TS23: epithalamus Present Regionally restricted 2G Expression is in the intermediate zone of epithalamus.

Specimen 2K: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Strong 2K Expression is in both the subiculum and Ammon's horn.

Specimen 2O: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: thalamus Present Regionally restricted 2O Expression is in the lateral geniculate nucleus and the paraventricular nucleus.

Specimen Table 1 E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Strong Regionally restricted Expression is in the ventral thalamus.
TS20: telencephalon Moderate Regionally restricted Expression is in the basal telencephalon (amygdala).
TS20: epithalamus Moderate Regionally restricted Expression is in the intermediate zone.
TS20: forebrain Weak Regionally restricted Expression is in the hippocampus.
TS20: neocortex Weak

Specimen Table 1 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: epithalamus Strong
TS23: hippocampus Strong
TS23: neocortex Strong
TS23: thalamus Strong Regionally restricted Expression is in the ventral thalamus.
TS23: pallidum Moderate Regionally restricted Expression is in the ventral pallidum.

Specimen Table 1 E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: epithalamus Weak
TS25: neocortex Weak
TS25: hippocampus Trace
TS25: thalamus Trace Regionally restricted Expression is in the ventral thalamus.
TS25: telencephalon Weak Regionally restricted Expression is in the neocortex and is absent in the ventral pallidum.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/30/2025
MGI 6.24
The Jackson Laboratory