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Gene Expression Data
Assay Details
Assay
Reference: J:76822 Anderson TR, et al., Differential Pax6 promoter activity and transcript expression during forebrain development. Mech Dev. 2002 Jun;114(1-2):171-5
Assay type: RNA in situ
MGI Accession ID: MGI:5302962
Gene symbol: Pax6
Gene name: paired box 6
Probe: P0 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1C: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future prosencephalon Absent 1C

Specimen 1H: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future forebrain Absent 1H

Specimen 1M: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Weak 1M

Specimen 2B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Present 2B
TS23: neocortex Weak 2B
TS23: pallidum Weak Regionally restricted 2B Expression is in the ventral pallidum.

Specimen 2F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Weak 2F
TS23: thalamus Weak Regionally restricted 2F Expression is in the external medullary lamina.
TS23: epithalamus Weak Regionally restricted 2F Expression is in the intermediate zone of epithalamus.

Specimen 2J: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Weak 2J Expression is in the Ammon's horn at a caudal level.

Specimen 2N: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: thalamus Weak Regionally restricted 2N Expression is in the lateral geniculate nucleus, external medullary lamina, and the paraventricular nucleus.

Specimen Table 1 E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: epithalamus Weak Regionally restricted Expression is in the intermediate zone.
TS20: neocortex Trace
TS20: thalamus Trace Regionally restricted Expression is in the ventral thalamus.
TS20: forebrain Trace Regionally restricted Expression is in the hippocampus.
TS20: telencephalon Trace Regionally restricted Expression is in the neocortex and is absent in the basal telencephalon (amygdala).

Specimen Table 1 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: epithalamus Moderate
TS23: hippocampus Moderate
TS23: thalamus Moderate Regionally restricted Expression is in the ventral thalamus.
TS23: neocortex Weak Regionally restricted
TS23: pallidum Trace Regionally restricted Expression is in the ventral pallidum.

Specimen Table 1 E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: neocortex Trace
TS25: telencephalon Trace Regionally restricted Expression is in the neocortex and is absent in the ventral pallidum.
TS25: epithalamus Absent
TS25: hippocampus Absent
TS25: thalamus Absent Absent in the ventral thalamus.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/30/2025
MGI 6.24
The Jackson Laboratory