Gene Expression Data
Assay Details
Assay
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Reference:
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J:86049
Gavalas A, et al., Neuronal defects in the hindbrain of Hoxa1, Hoxb1 and Hoxb2 mutants reflect regulatory interactions among these Hox genes. Development. 2003 Dec;130(23):5663-79
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5300167
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Gene symbol:
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Phox2b
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Gene name:
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paired-like homeobox 2b
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Probe:
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Phox2b cDNA3
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Results
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Specimen
2I:
embryonic day 10.5
(more )
Note: This specimen is flat-mounted.
Specimen
2I:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
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Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
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2I
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TS17: rhombomere 2 |
Present |
Non-Uniform |
2I
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Expression is upregulated in a medial column extending from rhombomere 2 to 6.
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TS17: rhombomere 3 |
Present |
Non-Uniform |
2I
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Expression is upregulated in a medial column extending from rhombomere 2 to 6.
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TS17: rhombomere 4 |
Present |
Non-Uniform |
2I
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Expression is strongest in a ventral rhombomere 4 column. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.
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TS17: rhombomere 5 |
Present |
Non-Uniform |
2I
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Expression is upregulated in a medial column extending from rhombomere 2 to 6. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.
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TS17: rhombomere 6 |
Present |
Non-Uniform |
2I
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Expression is upregulated in a medial column extending from rhombomere 2 to 6. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.
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Specimen
2J:
(close )
Genetic Background:
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involves: 129S7/SvEvBrd * C57BL/6
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Mutant Allele(s):
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Hoxb1tm1Brd/Hoxb1tm1Brd
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
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2J
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Expression is present in the mutant, but unlike in wild-type, the medial and dorsal columns overlap by only two rhombomeres.
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TS17: rhombomere 4 |
Present |
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2J
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In the mutant there is no rhombomere 4 specific upregulation of expression, leaving it similar to that found in rhombomeres 2 and 3.
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TS17: rhombomere 2 |
Present |
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2J
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TS17: rhombomere 3 |
Present |
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2J
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Specimen
2K:
(close )
Genetic Background:
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involves: 129
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Mutant Allele(s):
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Hoxb2tm1Fmr/Hoxb2tm1Fmr
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
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Specimen
2L:
(close )
Genetic Background:
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involves: 129S2/SvPas * C57BL/6
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Mutant Allele(s):
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Hoxa1tm1Ipc/Hoxa1tm1Ipc
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
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2L
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Expression is present in the mutant, but there is no rhombomere 4 specific upregulation of expression. Unlike in wild-type, the medial and dorsal columns overlap by only one rhombomere.
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TS17: rhombomere 4 |
Present |
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2L
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Expression is present in the mutant, but there is no rhombomere 4 specific upregulation of expression. Unlike in wild-type, the medial and dorsal columns overlap by only one rhombomere.
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Specimen
5A:
embryonic day 12.5
(more )
Note: This specimen is flat-mounted; this is a ventricular view.
Specimen
5A:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a ventricular view.
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Specimen
5B:
embryonic day 12.5; Hoxb1tm1Brd/ Hoxb1tm1Brd
(more )
Note: This specimen is flat-mounted; this is a ventricular view.
Specimen
5B:
(close )
Genetic Background:
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involves: 129S7/SvEvBrd * C57BL/6
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Mutant Allele(s):
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Hoxb1tm1Brd/Hoxb1tm1Brd
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a ventricular view.
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Structure |
Level |
Pattern |
Image |
Note |
TS20: facial ganglion |
Absent |
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5B
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There is a lack of expression in the migratory pathway of the facial motoneurons.
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Specimen
5C:
embryonic day 12.5; Hoxb2tm1Fmr/ Hoxb2tm1Fmr
(more )
Note: This specimen is flat-mounted; this is a ventricular view.
Specimen
5C:
(close )
Genetic Background:
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involves: 129
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Mutant Allele(s):
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Hoxb2tm1Fmr/Hoxb2tm1Fmr
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a ventricular view.
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Specimen
5D:
embryonic day 12.5
(more )
Note: This specimen is flat-mounted; this is a pial view.
Specimen
5D:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a pial view.
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Specimen
5E:
embryonic day 12.5; Hoxb1tm1Brd/ Hoxb1tm1Brd
(more )
Note: This specimen is flat-mounted; this is a pial view.
Specimen
5E:
(close )
Genetic Background:
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involves: 129S7/SvEvBrd * C57BL/6
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Mutant Allele(s):
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Hoxb1tm1Brd/Hoxb1tm1Brd
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a pial view.
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Specimen
5F:
embryonic day 12.5; Hoxb2tm1Fmr/ Hoxb2tm1Fmr
(more )
Note: This specimen is flat-mounted; this is a pial view.
Specimen
5F:
(close )
Genetic Background:
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involves: 129
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Mutant Allele(s):
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Hoxb2tm1Fmr/Hoxb2tm1Fmr
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted; this is a pial view.
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