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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828486
Gene symbol: Stat3
Gene name: signal transducer and activator of transcription 3
Probe: MGC clone 6089
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004868_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Strong Regionally restricted euxassay_004868_01
Specimen euxassay_004868_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Strong Regionally restricted euxassay_004868_02
Specimen euxassay_004868_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_03
TS23: hand mesenchyme Strong Regionally restricted euxassay_004868_03
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_03
Specimen euxassay_004868_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_04
TS23: facial ganglion Strong Regionally restricted euxassay_004868_04
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_04
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_004868_04
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_004868_04
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_04
Specimen euxassay_004868_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_05
TS23: facial ganglion Strong Regionally restricted euxassay_004868_05
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_05
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_004868_05
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004868_05
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004868_05
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004868_05
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_004868_05
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004868_05
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_05
Specimen euxassay_004868_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_004868_06
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_06
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_06
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004868_06
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004868_06
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004868_06
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004868_06
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_06
Specimen euxassay_004868_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_07
TS23: pons mantle layer Strong Regionally restricted euxassay_004868_07 trigeminal motor nucleus
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004868_07 facial motor nucleus
TS23: dorsal grey horn Strong Regionally restricted euxassay_004868_07
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_07
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_07
Specimen euxassay_004868_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_08
TS23: thymus primordium Strong Uniform euxassay_004868_08
TS23: dorsal grey horn Strong Regionally restricted euxassay_004868_08
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_08
Specimen euxassay_004868_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_09
TS23: thymus primordium Strong Uniform euxassay_004868_09
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_09
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_09
Specimen euxassay_004868_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Strong Uniform euxassay_004868_10
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_10
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_10
Specimen euxassay_004868_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_11
TS23: thymus primordium Strong Uniform euxassay_004868_11
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_11
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_11
TS23: axial skeleton tail region Strong Regionally restricted euxassay_004868_11
Specimen euxassay_004868_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_12
TS23: thymus primordium Strong Uniform euxassay_004868_12
TS23: ventral grey horn Strong Regionally restricted euxassay_004868_12
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_12
Specimen euxassay_004868_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004868_13 facial motor nucleus
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_13
Specimen euxassay_004868_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004868_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004868_14 facial motor nucleus
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_14
Specimen euxassay_004868_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_004868_15
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_15
Specimen euxassay_004868_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_16
TS23: pons mantle layer Strong Regionally restricted euxassay_004868_16 trigeminal motor nucleus
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_16
Specimen euxassay_004868_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_17
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_17
Specimen euxassay_004868_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_18
TS23: facial ganglion Strong Regionally restricted euxassay_004868_18
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004868_18
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_18
Specimen euxassay_004868_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_19
TS23: facial ganglion Strong Regionally restricted euxassay_004868_19
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004868_19
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_004868_19
TS23: choroid invagination Strong Regionally restricted euxassay_004868_19
Specimen euxassay_004868_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_20
TS23: facial ganglion Strong Regionally restricted euxassay_004868_20
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004868_20
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004868_20
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004868_20
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004868_20
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_004868_20
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004868_20
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_20
Specimen euxassay_004868_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004868_21
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004868_21
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_004868_21
Specimen euxassay_004868_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004868_22
Specimen euxassay_004868_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004868_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory