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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828290
Gene symbol: Slc9a6
Gene name: solute carrier family 9 (sodium/hydrogen exchanger), member 6
Probe: T37048
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebellum Weak
TS23: cerebral cortex Weak
TS23: hypothalamus Weak
TS23: medulla oblongata Weak
TS23: midbrain Weak
TS23: pons Weak
TS23: thalamus Weak
Specimen euxassay_012153_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_01
Specimen euxassay_012153_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_02
Specimen euxassay_012153_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_03
Specimen euxassay_012153_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_04
TS23: facial ganglion Moderate Regionally restricted euxassay_012153_04
Specimen euxassay_012153_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_05
Specimen euxassay_012153_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012153_06
Specimen euxassay_012153_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012153_07
Specimen euxassay_012153_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_012153_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_08
Specimen euxassay_012153_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_09
TS23: spinal cord Weak Regionally restricted euxassay_012153_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_09
Specimen euxassay_012153_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_10
TS23: spinal cord Weak Regionally restricted euxassay_012153_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_10
Specimen euxassay_012153_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_11
TS23: spinal cord Weak Regionally restricted euxassay_012153_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_11
Specimen euxassay_012153_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_12
TS23: spinal cord Weak Regionally restricted euxassay_012153_12
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_12
Specimen euxassay_012153_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_13
TS23: spinal cord Weak Regionally restricted euxassay_012153_13
Specimen euxassay_012153_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_14
TS23: spinal cord Weak Regionally restricted euxassay_012153_14
Specimen euxassay_012153_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_15
TS23: spinal cord Weak Regionally restricted euxassay_012153_15
Specimen euxassay_012153_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_012153_16
TS23: spinal cord Moderate Regionally restricted euxassay_012153_16
Specimen euxassay_012153_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_012153_17
TS23: spinal cord Moderate Regionally restricted euxassay_012153_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_17
TS23: vagus ganglion Moderate Regionally restricted euxassay_012153_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_17
Specimen euxassay_012153_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_012153_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_18
TS23: facial ganglion Moderate Regionally restricted euxassay_012153_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012153_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012153_18
Specimen euxassay_012153_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012153_19
Specimen euxassay_012153_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012153_20
Specimen euxassay_012153_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012153_21
TS23: facial ganglion Moderate Regionally restricted euxassay_012153_21
Specimen euxassay_012153_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_22
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012153_22
Specimen euxassay_012153_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Weak Regionally restricted euxassay_012153_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory