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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828265
Gene symbol: Slc6a4
Gene name: solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Probe: T56056
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen S4: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brainstem Strong Regionally restricted S4E E14.5 Expression is present in the raphe nuclei.
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: medulla oblongata Strong
TS23: midbrain Strong
TS23: pons Strong
Specimen euxassay_019733_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_01
Specimen euxassay_019733_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_02
Specimen euxassay_019733_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_03
Specimen euxassay_019733_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_04
Specimen euxassay_019733_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_05
Specimen euxassay_019733_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_06
Specimen euxassay_019733_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_07
Specimen euxassay_019733_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_08
Specimen euxassay_019733_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_09
Specimen euxassay_019733_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_10
TS23: pons mantle layer Strong Spotted euxassay_019733_10
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_10
Specimen euxassay_019733_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_11
TS23: midbrain mantle layer Strong Spotted euxassay_019733_11
TS23: pons mantle layer Strong Spotted euxassay_019733_11
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_11
Specimen euxassay_019733_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_12
TS23: pons mantle layer Strong Spotted euxassay_019733_12
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_12
TS23: midbrain mantle layer Strong Spotted euxassay_019733_12
Specimen euxassay_019733_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Spotted euxassay_019733_13
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_13
Specimen euxassay_019733_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_14
TS23: midbrain mantle layer Strong Spotted euxassay_019733_14
TS23: pons mantle layer Strong Spotted euxassay_019733_14
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_14
Specimen euxassay_019733_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_15
TS23: pons mantle layer Strong Spotted euxassay_019733_15
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_15
TS23: midbrain mantle layer Strong Spotted euxassay_019733_15
Specimen euxassay_019733_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_16
TS23: pons mantle layer Strong Spotted euxassay_019733_16
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_019733_16
Specimen euxassay_019733_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_17
Specimen euxassay_019733_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_18
Specimen euxassay_019733_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_19
Specimen euxassay_019733_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_20
Specimen euxassay_019733_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_21
Specimen euxassay_019733_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_22
Specimen euxassay_019733_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_23
Specimen euxassay_019733_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Spotted euxassay_019733_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory