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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828259
Gene symbol: Slc6a11
Gene name: solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Probe: T56006
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; it is possible another gene-specific probe was used.
Structure Level Pattern Image Note
TS23: thalamus Weak
TS23: hypothalamus Weak
TS23: midbrain Weak
TS23: pons Weak
TS23: medulla oblongata Weak
Specimen euxassay_019686_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_01
Specimen euxassay_019686_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_02
Specimen euxassay_019686_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_03
Specimen euxassay_019686_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_04
TS23: lung Moderate Regionally restricted euxassay_019686_04
Specimen euxassay_019686_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_05
TS23: lung Moderate Regionally restricted euxassay_019686_05
Specimen euxassay_019686_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_06
TS23: lung Moderate Regionally restricted euxassay_019686_06
Specimen euxassay_019686_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_07
TS23: lung Moderate Regionally restricted euxassay_019686_07
Specimen euxassay_019686_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_08
TS23: pons mantle layer Strong Single cells euxassay_019686_08
TS23: lung Moderate Regionally restricted euxassay_019686_08
Specimen euxassay_019686_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_09
TS23: pons mantle layer Strong Single cells euxassay_019686_09
TS23: lung Moderate Regionally restricted euxassay_019686_09
TS23: heart ventricle Strong Spotted euxassay_019686_09
Specimen euxassay_019686_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_10
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_10
TS23: midbrain mantle layer Strong Single cells euxassay_019686_10
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_10
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_10
TS23: lung Moderate Regionally restricted euxassay_019686_10
TS23: heart ventricle Strong Spotted euxassay_019686_10
Specimen euxassay_019686_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_11
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_11
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_11
TS23: midbrain mantle layer Strong Single cells euxassay_019686_11
TS23: lung Moderate Regionally restricted euxassay_019686_11
TS23: heart ventricle Strong Spotted euxassay_019686_11
Specimen euxassay_019686_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_019686_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_12
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_12
TS23: pons mantle layer Strong Single cells euxassay_019686_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_12
TS23: midbrain mantle layer Strong Single cells euxassay_019686_12
TS23: lung Moderate Regionally restricted euxassay_019686_12
TS23: heart ventricle Strong Spotted euxassay_019686_12
Specimen euxassay_019686_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_019686_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_019686_13
TS23: ventral grey horn Strong Regionally restricted euxassay_019686_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_13
TS23: pons mantle layer Strong Single cells euxassay_019686_13
TS23: lung Weak Regionally restricted euxassay_019686_13
TS23: heart ventricle Strong Spotted euxassay_019686_13
Specimen euxassay_019686_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_019686_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_019686_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_14
TS23: ventral grey horn Strong Regionally restricted euxassay_019686_14
TS23: intermediate grey horn Strong Regionally restricted euxassay_019686_14
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_14
TS23: pons mantle layer Strong Single cells euxassay_019686_14
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_14
TS23: lung Weak Regionally restricted euxassay_019686_14
TS23: heart ventricle Strong Spotted euxassay_019686_14
Specimen euxassay_019686_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_15
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_15
TS23: ventral grey horn Strong Regionally restricted euxassay_019686_15
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_15
TS23: midbrain mantle layer Strong Single cells euxassay_019686_15
TS23: pons mantle layer Strong Single cells euxassay_019686_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_15
TS23: lung Moderate Regionally restricted euxassay_019686_15
TS23: heart ventricle Strong Spotted euxassay_019686_15
Specimen euxassay_019686_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019686_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_16
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_019686_16
TS23: midbrain mantle layer Strong Single cells euxassay_019686_16
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_16
TS23: lung Weak Regionally restricted euxassay_019686_16
TS23: heart ventricle Moderate Spotted euxassay_019686_16
Specimen euxassay_019686_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_019686_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019686_17
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_019686_17
TS23: midbrain mantle layer Strong Single cells euxassay_019686_17
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_019686_17
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_17
TS23: pons mantle layer Strong Single cells euxassay_019686_17
TS23: lung Moderate Regionally restricted euxassay_019686_17
TS23: heart ventricle Moderate Spotted euxassay_019686_17
Specimen euxassay_019686_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_18
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_18
TS23: lung Moderate Regionally restricted euxassay_019686_18
TS23: heart ventricle Strong Spotted euxassay_019686_18
Specimen euxassay_019686_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_019686_19
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_019686_19
TS23: pons mantle layer Strong Single cells euxassay_019686_19
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_019686_19
TS23: lung Moderate Regionally restricted euxassay_019686_19
Specimen euxassay_019686_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_20
TS23: lung Moderate Regionally restricted euxassay_019686_20
Specimen euxassay_019686_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_21
TS23: lung Moderate Regionally restricted euxassay_019686_21
Specimen euxassay_019686_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_22
TS23: lung Moderate Regionally restricted euxassay_019686_22
Specimen euxassay_019686_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019686_23
TS23: lung Moderate Regionally restricted euxassay_019686_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory