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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828207
Gene symbol: Slc36a1
Gene name: solute carrier family 36 (proton/amino acid symporter), member 1
Probe: ES1681 probe 1627
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: midbrain Weak
TS23: cerebellum Moderate
TS23: medulla oblongata Moderate
TS23: pons Moderate
Specimen euxassay_012143_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_03
Specimen euxassay_012143_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_04
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_04
Specimen euxassay_012143_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_05
TS23: facial ganglion Weak Regionally restricted euxassay_012143_05
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_05
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012143_05
Specimen euxassay_012143_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_06
TS23: facial ganglion Weak Regionally restricted euxassay_012143_06
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_06
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012143_06
TS23: upper jaw molar Weak Regionally restricted euxassay_012143_06
TS23: lower jaw molar Weak Regionally restricted euxassay_012143_06
Specimen euxassay_012143_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_07
TS23: vagus ganglion Weak Regionally restricted euxassay_012143_07
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_07
TS23: pons mantle layer Weak Regionally restricted euxassay_012143_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012143_07
TS23: cervical ganglion Weak Regionally restricted euxassay_012143_07
Specimen euxassay_012143_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012143_08
TS23: ventral grey horn Weak Regionally restricted euxassay_012143_08
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_012143_08
TS23: cervical ganglion Weak Regionally restricted euxassay_012143_08
Specimen euxassay_012143_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012143_09
TS23: ventral grey horn Weak Regionally restricted euxassay_012143_09
TS23: thymus primordium Weak Regionally restricted euxassay_012143_09
TS23: thyroid gland Weak Regionally restricted euxassay_012143_09
Specimen euxassay_012143_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_10
TS23: thoracic ganglion Weak Regionally restricted euxassay_012143_10
TS23: lower jaw incisor Weak Regionally restricted euxassay_012143_10
TS23: upper jaw incisor Weak Regionally restricted euxassay_012143_10
TS23: thymus primordium Weak Regionally restricted euxassay_012143_10
Specimen euxassay_012143_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: urethra Weak Regionally restricted euxassay_012143_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Weak Regionally restricted euxassay_012143_11
Specimen euxassay_012143_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_12
TS23: ventral grey horn Weak Regionally restricted euxassay_012143_12
TS23: urethra Weak Regionally restricted euxassay_012143_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Weak Regionally restricted euxassay_012143_12
Specimen euxassay_012143_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_13
TS23: ventral grey horn Weak Regionally restricted euxassay_012143_13
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_012143_13
TS23: lower jaw incisor Weak Regionally restricted euxassay_012143_13
TS23: thymus primordium Weak Regionally restricted euxassay_012143_13
TS23: thyroid gland Weak Regionally restricted euxassay_012143_13
Specimen euxassay_012143_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012143_14
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012143_14
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_012143_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_012143_14
TS23: upper jaw incisor Weak Regionally restricted euxassay_012143_14
Specimen euxassay_012143_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012143_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012143_15
TS23: cervical ganglion Weak Regionally restricted euxassay_012143_15
Specimen euxassay_012143_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012143_16
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_16
TS23: pons mantle layer Weak Regionally restricted euxassay_012143_16
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_16
TS23: lower jaw molar Weak Regionally restricted euxassay_012143_16
TS23: upper jaw molar Weak Regionally restricted euxassay_012143_16
Specimen euxassay_012143_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_17
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_012143_17
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_17
TS23: pons mantle layer Weak Regionally restricted euxassay_012143_17
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012143_17
TS23: lower jaw molar Weak Regionally restricted euxassay_012143_17
TS23: upper jaw molar Weak Regionally restricted euxassay_012143_17
Specimen euxassay_012143_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_18
TS23: facial ganglion Weak Regionally restricted euxassay_012143_18
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_18
TS23: lower jaw molar Weak Regionally restricted euxassay_012143_18
TS23: upper jaw molar Weak Regionally restricted euxassay_012143_18
Specimen euxassay_012143_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_19
TS23: facial ganglion Weak Regionally restricted euxassay_012143_19
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_19
Specimen euxassay_012143_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_20
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012143_20
Specimen euxassay_012143_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012143_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory