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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828205
Gene symbol: Slc35f1
Gene name: solute carrier family 35, member F1
Probe: T56026
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe that was to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex Moderate
TS23: thalamus Moderate
TS23: hypothalamus Weak
TS23: midbrain Moderate
TS23: cerebellum Strong
TS23: pons Moderate
TS23: medulla oblongata Moderate
Specimen euxassay_019705_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019705_01
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_01
Specimen euxassay_019705_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019705_02
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_02
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_02
Specimen euxassay_019705_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_03
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019705_03
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_03
Specimen euxassay_019705_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_04
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019705_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_04
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_04
Specimen euxassay_019705_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_05
TS23: rest of cerebellum Moderate Regionally restricted euxassay_019705_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_05
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_05
Specimen euxassay_019705_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_06
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_06
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019705_06
Specimen euxassay_019705_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_07
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019705_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_07
Specimen euxassay_019705_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_08
Specimen euxassay_019705_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_09
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_019705_09
Specimen euxassay_019705_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_10
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_019705_10
Specimen euxassay_019705_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_11
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_019705_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_019705_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_019705_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_11
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_019705_11
Specimen euxassay_019705_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_019705_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_019705_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_019705_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_12
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_12
Specimen euxassay_019705_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_019705_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_019705_13
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_019705_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_13
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_13
Specimen euxassay_019705_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_019705_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_019705_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_14
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_019705_14
Specimen euxassay_019705_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_15
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_019705_15
Specimen euxassay_019705_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019705_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019705_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019705_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019705_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_16
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_16
Specimen euxassay_019705_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_019705_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_17
TS23: pons mantle layer Weak Regionally restricted euxassay_019705_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_019705_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_17
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019705_17
Specimen euxassay_019705_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_18
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_019705_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019705_18
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_019705_18
TS23: pons ventricular layer Weak Regionally restricted euxassay_019705_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_18
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019705_18
Specimen euxassay_019705_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_19
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_019705_19
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019705_19
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_19
Specimen euxassay_019705_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019705_20
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_20
Specimen euxassay_019705_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_21
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019705_21
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_21
Specimen euxassay_019705_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_22
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_22
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019705_22
Specimen euxassay_019705_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_019705_23
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_23
Specimen euxassay_019705_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019705_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory