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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828079
Gene symbol: Six1
Gene name: sine oculis-related homeobox 1
Probe: T30237
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010410_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_01
Specimen euxassay_010410_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_02
TS23: diaphragm Weak Regionally restricted euxassay_010410_02
Specimen euxassay_010410_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_03
TS23: diaphragm Weak Regionally restricted euxassay_010410_03
Specimen euxassay_010410_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_04
TS23: diaphragm Weak Regionally restricted euxassay_010410_04
Specimen euxassay_010410_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_05
TS23: foot Moderate Regionally restricted euxassay_010410_05
TS23: diaphragm Weak Regionally restricted euxassay_010410_05
Specimen euxassay_010410_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_06
TS23: foot Moderate Regionally restricted euxassay_010410_06
TS23: diaphragm Weak Regionally restricted euxassay_010410_06
Specimen euxassay_010410_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_07
TS23: diaphragm Weak Regionally restricted euxassay_010410_07
Specimen euxassay_010410_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_08
TS23: diaphragm Weak Regionally restricted euxassay_010410_08
Specimen euxassay_010410_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_09
TS23: diaphragm Weak Regionally restricted euxassay_010410_09
Specimen euxassay_010410_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_010410_10
TS23: pituitary gland Strong Regionally restricted euxassay_010410_10
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_10
TS23: diaphragm Weak Regionally restricted euxassay_010410_10
Specimen euxassay_010410_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_010410_11
TS23: pituitary gland Strong Regionally restricted euxassay_010410_11
TS23: tongue Weak Regionally restricted euxassay_010410_11
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_11
Specimen euxassay_010410_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_010410_12
TS23: pituitary gland Strong Regionally restricted euxassay_010410_12
TS23: tongue Weak Regionally restricted euxassay_010410_12
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_12
Specimen euxassay_010410_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_010410_13
TS23: pituitary gland Strong Regionally restricted euxassay_010410_13
TS23: tongue Weak Regionally restricted euxassay_010410_13
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_13
TS23: diaphragm Weak Regionally restricted euxassay_010410_13
Specimen euxassay_010410_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_010410_14
TS23: pituitary gland Strong Regionally restricted euxassay_010410_14
TS23: tongue Weak Regionally restricted euxassay_010410_14
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_14
TS23: diaphragm Weak Regionally restricted euxassay_010410_14
Specimen euxassay_010410_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pituitary gland Strong Regionally restricted euxassay_010410_15
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_15
TS23: diaphragm Weak Regionally restricted euxassay_010410_15
Specimen euxassay_010410_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_16
TS23: diaphragm Weak Regionally restricted euxassay_010410_16
Specimen euxassay_010410_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_17
TS23: diaphragm Weak Regionally restricted euxassay_010410_17
Specimen euxassay_010410_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_18
TS23: diaphragm Weak Regionally restricted euxassay_010410_18
Specimen euxassay_010410_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_19
TS23: diaphragm Weak Regionally restricted euxassay_010410_19
Specimen euxassay_010410_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_20
TS23: hindlimb digit 1 Moderate Regionally restricted euxassay_010410_20
TS23: hindlimb digit 2 Moderate Regionally restricted euxassay_010410_20
TS23: hindlimb digit 3 Moderate Regionally restricted euxassay_010410_20
TS23: hindlimb digit 4 Moderate Regionally restricted euxassay_010410_20
TS23: hindlimb digit 5 Moderate Regionally restricted euxassay_010410_20
TS23: diaphragm Weak Regionally restricted euxassay_010410_20
Specimen euxassay_010410_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_21
TS23: hindlimb digit 1 Moderate Regionally restricted euxassay_010410_21
TS23: hindlimb digit 2 Moderate Regionally restricted euxassay_010410_21
TS23: hindlimb digit 3 Moderate Regionally restricted euxassay_010410_21
TS23: hindlimb digit 4 Moderate Regionally restricted euxassay_010410_21
TS23: hindlimb digit 5 Moderate Regionally restricted euxassay_010410_21
Specimen euxassay_010410_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_22
TS23: hindlimb digit 1 Moderate Regionally restricted euxassay_010410_22
TS23: hindlimb digit 2 Moderate Regionally restricted euxassay_010410_22
TS23: hindlimb digit 3 Moderate Regionally restricted euxassay_010410_22
TS23: hindlimb digit 4 Moderate Regionally restricted euxassay_010410_22
TS23: hindlimb digit 5 Moderate Regionally restricted euxassay_010410_22
Specimen euxassay_010410_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_23
Specimen euxassay_010410_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_010410_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory