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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828056
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: MH459 probe 283
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_017945_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_02
TS23: neural retina Moderate Regionally restricted euxassay_017945_02
Specimen euxassay_017945_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_03
TS23: lung Strong Regionally restricted euxassay_017945_03
TS23: neural retina Moderate Regionally restricted euxassay_017945_03
TS23: metanephros Moderate Regionally restricted euxassay_017945_03
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_03
TS23: amygdala Present euxassay_017945_03
Specimen euxassay_017945_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_04
TS23: lung Strong Regionally restricted euxassay_017945_04
TS23: midgut Strong Regionally restricted euxassay_017945_04
TS23: metanephros Weak Regionally restricted euxassay_017945_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_04
TS23: amygdala Present euxassay_017945_04
Specimen euxassay_017945_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_05
TS23: lung Strong Regionally restricted euxassay_017945_05
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_05
TS23: midgut Strong Regionally restricted euxassay_017945_05
TS23: metanephros Weak Regionally restricted euxassay_017945_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_05
TS23: amygdala Present euxassay_017945_05
Specimen euxassay_017945_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_06
TS23: lung Strong Regionally restricted euxassay_017945_06
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_06
TS23: midgut Strong Regionally restricted euxassay_017945_06
TS23: metanephros Weak Regionally restricted euxassay_017945_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_06
TS23: amygdala Present euxassay_017945_06
Specimen euxassay_017945_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_07
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_07
TS23: midgut Strong Regionally restricted euxassay_017945_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_07
TS23: amygdala Present euxassay_017945_07
TS23: spinal cord floor plate Weak Regionally restricted euxassay_017945_07
Specimen euxassay_017945_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_08
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_08
TS23: midgut Strong Regionally restricted euxassay_017945_08
TS23: pericardium Weak Spotted euxassay_017945_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_08
TS23: amygdala Present euxassay_017945_08
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_08
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_08
Specimen euxassay_017945_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_09
TS23: bladder Strong Regionally restricted euxassay_017945_09
TS23: urethra Strong Regionally restricted euxassay_017945_09 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: midgut Strong Regionally restricted euxassay_017945_09
TS23: hindgut Strong Regionally restricted euxassay_017945_09
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_09
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_09
TS23: pericardium Weak Spotted euxassay_017945_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_09
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_09
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_09
Specimen euxassay_017945_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_10
TS23: bladder Strong Regionally restricted euxassay_017945_10
TS23: urethra Strong Regionally restricted euxassay_017945_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: hindgut Strong Regionally restricted euxassay_017945_10
TS23: midgut Strong Regionally restricted euxassay_017945_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_10
TS23: pericardium Strong Spotted euxassay_017945_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_10
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_10
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_10
Specimen euxassay_017945_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_11
TS23: bladder Strong Regionally restricted euxassay_017945_11
TS23: midgut Strong Regionally restricted euxassay_017945_11
TS23: pericardium Strong Spotted euxassay_017945_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_11
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_017945_11
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_11
Specimen euxassay_017945_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_12
TS23: midgut Strong Regionally restricted euxassay_017945_12
TS23: esophagus Strong Regionally restricted euxassay_017945_12
TS23: trachea Weak Regionally restricted euxassay_017945_12
TS23: pericardium Strong Spotted euxassay_017945_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_12
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_12
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_12
Specimen euxassay_017945_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_13
TS23: midgut Strong Regionally restricted euxassay_017945_13
TS23: esophagus Strong Regionally restricted euxassay_017945_13
TS23: trachea Weak Regionally restricted euxassay_017945_13
TS23: pericardium Strong Spotted euxassay_017945_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_13
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_13
Specimen euxassay_017945_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_14
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_14
TS23: midgut Strong Regionally restricted euxassay_017945_14
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_14
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_14
TS23: esophagus Strong Regionally restricted euxassay_017945_14
TS23: trachea Weak Regionally restricted euxassay_017945_14
TS23: pericardium Strong Spotted euxassay_017945_14
TS23: metanephros Weak Regionally restricted euxassay_017945_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_14
TS23: metencephalon floor plate Strong Regionally restricted euxassay_017945_14
TS23: medulla oblongata floor plate Strong Regionally restricted euxassay_017945_14
TS23: spinal cord floor plate Strong Regionally restricted euxassay_017945_14
Specimen euxassay_017945_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_15
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_15
TS23: midgut Strong Regionally restricted euxassay_017945_15
TS23: stomach Strong Regionally restricted euxassay_017945_15
TS23: upper jaw incisor Strong Regionally restricted euxassay_017945_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_017945_15
TS23: esophagus Strong Regionally restricted euxassay_017945_15
TS23: pericardium Strong Spotted euxassay_017945_15
TS23: metanephros Weak Regionally restricted euxassay_017945_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_15
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_017945_15
TS23: medulla oblongata floor plate Strong Regionally restricted euxassay_017945_15
TS23: metencephalon floor plate Strong Regionally restricted euxassay_017945_15
Specimen euxassay_017945_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_16
TS23: adrenal cortex Moderate Regionally restricted euxassay_017945_16
TS23: stomach Strong Regionally restricted euxassay_017945_16
TS23: midgut Strong Regionally restricted euxassay_017945_16
TS23: pericardium Weak Spotted euxassay_017945_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_16
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_16
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_16
Specimen euxassay_017945_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_17
TS23: midgut Strong Regionally restricted euxassay_017945_17
TS23: stomach Strong Regionally restricted euxassay_017945_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_17
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_17
TS23: hypothalamus mantle layer Weak Single cells euxassay_017945_17
Specimen euxassay_017945_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_18
TS23: lung Strong Regionally restricted euxassay_017945_18
TS23: stomach Strong Regionally restricted euxassay_017945_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_017945_18
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_18
Specimen euxassay_017945_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_19
TS23: lung Strong Regionally restricted euxassay_017945_19
TS23: stomach Strong Regionally restricted euxassay_017945_19
TS23: lower jaw molar Strong Regionally restricted euxassay_017945_19
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_19
TS23: amygdala Present euxassay_017945_19
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_017945_19
Specimen euxassay_017945_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_017945_20
TS23: lung Strong Regionally restricted euxassay_017945_20
TS23: stomach Strong Regionally restricted euxassay_017945_20
TS23: upper jaw molar Strong Regionally restricted euxassay_017945_20
TS23: lower jaw molar Strong Regionally restricted euxassay_017945_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_017945_20
TS23: amygdala Present euxassay_017945_20
Specimen euxassay_017945_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_21
TS23: stomach Strong Regionally restricted euxassay_017945_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_21
TS23: amygdala Present euxassay_017945_21
Specimen euxassay_017945_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_017945_22
TS23: stomach Strong Regionally restricted euxassay_017945_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_22
TS23: amygdala Present euxassay_017945_22
Specimen euxassay_017945_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_017945_23
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017945_23
TS23: amygdala Present euxassay_017945_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory