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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827927
Gene symbol: Sdr42e1
Gene name: short chain dehydrogenase/reductase family 42E, member 1
Probe: IMAGE clone 2648754
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000194_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_01
TS23: limb digit Present Regionally restricted euxassay_000194_01 distal region of the fingers
TS23: axial muscle Moderate Uniform euxassay_000194_01
TS23: cranium Moderate Regionally restricted euxassay_000194_01 periosteum
TS23: telencephalon Strong Regionally restricted euxassay_000194_01 ventricular and subventricular layers
TS23: telencephalon ventricular layer Present euxassay_000194_01
TS23: skin Strong Uniform euxassay_000194_01
TS23: liver Moderate Spotted euxassay_000194_01
Specimen euxassay_000194_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_02
TS23: limb digit Present Regionally restricted euxassay_000194_02 distal region of the fingers
TS23: skin Strong Uniform euxassay_000194_02
TS23: axial muscle Moderate Uniform euxassay_000194_02
TS23: cranium Moderate Regionally restricted euxassay_000194_02 periosteum
TS23: central nervous system Strong Regionally restricted euxassay_000194_02 ventricular and subventricular layer
TS23: liver Moderate Spotted euxassay_000194_02
Specimen euxassay_000194_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_03
TS23: limb digit Present Regionally restricted euxassay_000194_03 distal region of the fingers
TS23: telencephalon Strong Regionally restricted euxassay_000194_03 ventricular and subventricular layers
TS23: telencephalon ventricular layer Present euxassay_000194_03
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_03
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_03
TS23: skeleton Moderate Uniform euxassay_000194_03
TS23: integumental system muscle Moderate Uniform euxassay_000194_03
TS23: skin Moderate Uniform euxassay_000194_03
TS23: liver Moderate Spotted euxassay_000194_03
Specimen euxassay_000194_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver Strong Uniform euxassay_000194_04
TS23: telencephalon Strong Regionally restricted euxassay_000194_04 ventricular and subventricular layers
TS23: telencephalon ventricular layer Present euxassay_000194_04
TS23: integumental system muscle Moderate Uniform euxassay_000194_04
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_04
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_04
TS23: skeleton Strong Uniform euxassay_000194_04
TS23: skin Strong Uniform euxassay_000194_04
Specimen euxassay_000194_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_06
TS23: skin Strong Uniform euxassay_000194_06
TS23: telencephalon Strong Regionally restricted euxassay_000194_06
TS23: telencephalon ventricular layer Present euxassay_000194_06
TS23: liver Moderate Spotted euxassay_000194_06
Specimen euxassay_000194_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: central nervous system Strong Regionally restricted euxassay_000194_07 ventricular layer and proliferative regions
TS23: telencephalon Strong Regionally restricted euxassay_000194_07
TS23: telencephalon ventricular layer Present euxassay_000194_07
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_07
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_07
TS23: skeleton Moderate Regionally restricted euxassay_000194_07 periosteum
TS23: liver Moderate Spotted euxassay_000194_07
TS23: integumental system muscle Moderate Uniform euxassay_000194_07
Specimen euxassay_000194_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_08
TS23: epidermis Strong Uniform euxassay_000194_08
TS23: vibrissa Strong Uniform euxassay_000194_08
TS23: skeleton Moderate Regionally restricted euxassay_000194_08 periosteum
TS23: central nervous system Strong Regionally restricted euxassay_000194_08 ventricular and subventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_08
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_08
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_08 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_08 rhombic lip
Specimen euxassay_000194_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_09
TS23: central nervous system Strong Regionally restricted euxassay_000194_09 ventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_09
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_09
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_09 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_09 rhombic lip
TS23: skeleton Moderate Regionally restricted euxassay_000194_09 periosteum
TS23: liver Moderate Spotted euxassay_000194_09
TS23: skin Strong Uniform euxassay_000194_09
Specimen euxassay_000194_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_10
TS23: skin Strong Uniform euxassay_000194_10
TS23: central nervous system Strong Regionally restricted euxassay_000194_10 ventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_10
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_10
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_10 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_10 rhombic lip
TS23: skeleton Moderate Regionally restricted euxassay_000194_10 periosteum
TS23: liver Moderate Spotted euxassay_000194_10
Specimen euxassay_000194_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: skeleton Moderate Regionally restricted euxassay_000194_11 periosteum
TS23: liver Moderate Spotted euxassay_000194_11
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_11 rhombic lip
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_11 rhombic lip
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_11
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_11
TS23: central nervous system Strong Regionally restricted euxassay_000194_11 ventricular layer
TS23: integumental system muscle Moderate Uniform euxassay_000194_11
Specimen euxassay_000194_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_12
TS23: central nervous system Strong Regionally restricted euxassay_000194_12 ventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_12
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_12
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_12 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_12 rhombic lip
TS23: skeleton Moderate Regionally restricted euxassay_000194_12 periosteum
TS23: liver Moderate Spotted euxassay_000194_12
Specimen euxassay_000194_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_13
TS23: skin Strong Uniform euxassay_000194_13
TS23: central nervous system Strong Regionally restricted euxassay_000194_13 ventricular layer
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_13 rhombic lip
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_13 rhombic lip
TS23: skeleton Moderate Regionally restricted euxassay_000194_13
Specimen euxassay_000194_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver Moderate Spotted euxassay_000194_14
TS23: skeleton Moderate Regionally restricted euxassay_000194_14 periosteum
TS23: central nervous system Strong Regionally restricted euxassay_000194_14 ventricular layer
TS23: integumental system muscle Moderate Uniform euxassay_000194_14
Specimen euxassay_000194_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_15
TS23: central nervous system Strong Regionally restricted euxassay_000194_15 ventricular layer
TS23: liver Moderate Spotted euxassay_000194_15
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_15
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_15
TS23: skeleton Moderate Regionally restricted euxassay_000194_15 periosteum
Specimen euxassay_000194_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_16
TS23: central nervous system Strong Regionally restricted euxassay_000194_16 ventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_16
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_16
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_16 rhombic lip
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_16 rhombic lip
TS23: skeleton Moderate Regionally restricted euxassay_000194_16 periosteum
TS23: liver Moderate Spotted euxassay_000194_16
Specimen euxassay_000194_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver Moderate Spotted euxassay_000194_17
TS23: skeleton Moderate Regionally restricted euxassay_000194_17 periosteum
TS23: central nervous system Strong Regionally restricted euxassay_000194_17 ventricular layer
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_17
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_17
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_17 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_17 rhombic lip
TS23: integumental system muscle Moderate Uniform euxassay_000194_17
TS23: skin Moderate Uniform euxassay_000194_17
Specimen euxassay_000194_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: central nervous system Strong Regionally restricted euxassay_000194_18 ventricular layer
TS23: liver Moderate Spotted euxassay_000194_18
TS23: skeleton Moderate Regionally restricted euxassay_000194_18 periosteum
TS23: limb Strong Regionally restricted euxassay_000194_18
TS23: limb digit Present Regionally restricted euxassay_000194_18 distal region of the fingers
TS23: axial musculature Moderate Uniform euxassay_000194_18
TS23: cranial musculature Moderate Uniform euxassay_000194_18
Specimen euxassay_000194_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_19
TS23: limb digit Present Regionally restricted euxassay_000194_19 distal region of the fingers
TS23: central nervous system Strong Regionally restricted euxassay_000194_19 ventricular layer
Specimen euxassay_000194_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: integumental system muscle Moderate Uniform euxassay_000194_20
TS23: skin Strong Uniform euxassay_000194_20
TS23: telencephalon Strong Regionally restricted euxassay_000194_20
TS23: telencephalon ventricular layer Present euxassay_000194_20
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_20
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_20
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_20 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_20 rhombic lip
TS23: skeleton Strong Regionally restricted euxassay_000194_20 periosteum
TS23: liver Moderate Spotted euxassay_000194_20
Specimen euxassay_000194_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: skeleton Strong Regionally restricted euxassay_000194_21 periosteum
TS23: liver Moderate Spotted euxassay_000194_21
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_000194_21 rhombic lip
TS23: metencephalon rest of alar plate ventricular layer Strong Regionally restricted euxassay_000194_21 rhombic lip
TS23: rest of cerebellum marginal layer Strong Uniform euxassay_000194_21
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_000194_21
TS23: telencephalon Strong Regionally restricted euxassay_000194_21
TS23: telencephalon ventricular layer Present euxassay_000194_21
TS23: skin Strong Uniform euxassay_000194_21
TS23: integumental system muscle Moderate Uniform euxassay_000194_21
TS23: limb Strong Regionally restricted euxassay_000194_21
TS23: limb digit Present Regionally restricted euxassay_000194_21 distal region of the fingers
Specimen euxassay_000194_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_22
TS23: limb digit Present Regionally restricted euxassay_000194_22 distal region of the fingers
TS23: integumental system muscle Moderate Uniform euxassay_000194_22
TS23: skin Strong Uniform euxassay_000194_22
TS23: telencephalon Strong Regionally restricted euxassay_000194_22
TS23: telencephalon ventricular layer Present euxassay_000194_22
TS23: liver Moderate Spotted euxassay_000194_22
TS23: skeleton Strong Uniform euxassay_000194_22 periosteum
Specimen euxassay_000194_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: limb Strong Regionally restricted euxassay_000194_23
TS23: limb digit Present Regionally restricted euxassay_000194_23 distal region of the fingers
TS23: integumental system muscle Moderate Uniform euxassay_000194_23
TS23: skin Strong Uniform euxassay_000194_23
TS23: telencephalon Strong Regionally restricted euxassay_000194_23
TS23: telencephalon ventricular layer Present euxassay_000194_23
TS23: liver Moderate Spotted euxassay_000194_23
TS23: skeleton Moderate Uniform euxassay_000194_23 periosteum
Specimen euxassay_000194_24: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver Moderate Spotted euxassay_000194_24
TS23: skeleton Moderate Regionally restricted euxassay_000194_24 periosteum
TS23: telencephalon Strong Regionally restricted euxassay_000194_24
TS23: telencephalon ventricular layer Present euxassay_000194_24
TS23: skin Strong Uniform euxassay_000194_24
TS23: integumental system muscle Moderate Uniform euxassay_000194_24
TS23: limb Strong Regionally restricted euxassay_000194_24
TS23: limb digit Present Regionally restricted euxassay_000194_24 distal region of the fingers
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory