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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827100
Gene symbol: Pcp4
Gene name: Purkinje cell protein 4
Probe: MGC clone 74301
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006129_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_01
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_01
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006129_01
TS23: rib Weak Regionally restricted euxassay_006129_01
TS23: mandible Moderate Regionally restricted euxassay_006129_01
TS23: fibula Moderate Regionally restricted euxassay_006129_01
TS23: tibia Moderate Regionally restricted euxassay_006129_01
Specimen euxassay_006129_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_02
TS23: renal calyx Moderate Regionally restricted euxassay_006129_02
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_02
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_02
TS23: midbrain mantle layer Moderate Graded euxassay_006129_02
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_02
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_02
TS23: rib Weak Regionally restricted euxassay_006129_02
TS23: mandible Moderate Regionally restricted euxassay_006129_02
TS23: femur Moderate Regionally restricted euxassay_006129_02
Specimen euxassay_006129_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_03
TS23: renal calyx Moderate Regionally restricted euxassay_006129_03
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_03
TS23: vagus ganglion Strong Uniform euxassay_006129_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_03
TS23: midbrain mantle layer Moderate Graded euxassay_006129_03
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_03
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_03
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_03
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_03
TS23: rib Weak Regionally restricted euxassay_006129_03
TS23: cervical ganglion Moderate Regionally restricted euxassay_006129_03
TS23: mandible Moderate Regionally restricted euxassay_006129_03
TS23: maxilla Moderate Regionally restricted euxassay_006129_03
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_03
Specimen euxassay_006129_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: renal calyx Moderate Regionally restricted euxassay_006129_04
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_04
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_04
TS23: midbrain mantle layer Moderate Graded euxassay_006129_04
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_04
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006129_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_04
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_04
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_04
TS23: rib Weak Regionally restricted euxassay_006129_04
TS23: cervical ganglion Moderate Regionally restricted euxassay_006129_04
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006129_04
TS23: mandible Moderate Regionally restricted euxassay_006129_04
TS23: maxilla Moderate Regionally restricted euxassay_006129_04
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_04
Specimen euxassay_006129_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_05
TS23: renal calyx Moderate Regionally restricted euxassay_006129_05
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_05
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_05
TS23: midbrain mantle layer Moderate Graded euxassay_006129_05
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_05
TS23: hypothalamus Moderate Regionally restricted euxassay_006129_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_05
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006129_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_05
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_05
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_05
TS23: rib Weak Regionally restricted euxassay_006129_05
TS23: thoracic ganglion Moderate Regionally restricted euxassay_006129_05
TS23: mandible Moderate Regionally restricted euxassay_006129_05
TS23: maxilla Moderate Regionally restricted euxassay_006129_05
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_05
TS23: stomach Weak Regionally restricted euxassay_006129_05
TS23: midgut Weak Regionally restricted euxassay_006129_05
Specimen euxassay_006129_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_06
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_06
TS23: olfactory epithelium Weak Regionally restricted euxassay_006129_06
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: midbrain mantle layer Moderate Graded euxassay_006129_06
TS23: hypothalamus Strong Regionally restricted euxassay_006129_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_06
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_06
TS23: rib Weak Regionally restricted euxassay_006129_06
TS23: mandible Moderate Regionally restricted euxassay_006129_06
TS23: maxilla Moderate Regionally restricted euxassay_006129_06
TS23: esophagus Moderate Regionally restricted euxassay_006129_06
TS23: midgut Weak Regionally restricted euxassay_006129_06
Specimen euxassay_006129_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_07
TS23: olfactory epithelium Weak Regionally restricted euxassay_006129_07
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: midbrain mantle layer Moderate Graded euxassay_006129_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: hypothalamus Strong Regionally restricted euxassay_006129_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006129_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_07
TS23: rib Weak Regionally restricted euxassay_006129_07
TS23: thoracic ganglion Weak Regionally restricted euxassay_006129_07
TS23: esophagus Moderate Regionally restricted euxassay_006129_07
TS23: midgut Weak Regionally restricted euxassay_006129_07
Specimen euxassay_006129_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_08
TS23: olfactory epithelium Weak Regionally restricted euxassay_006129_08
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: midbrain mantle layer Moderate Graded euxassay_006129_08
TS23: hypothalamus Strong Regionally restricted euxassay_006129_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006129_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_08
TS23: rectum Weak Regionally restricted euxassay_006129_08
TS23: midgut Weak Regionally restricted euxassay_006129_08
Specimen euxassay_006129_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006129_09
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_09
TS23: midbrain mantle layer Strong Graded euxassay_006129_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_09
TS23: hypothalamus Moderate Regionally restricted euxassay_006129_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_006129_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_09
TS23: thoracic ganglion Weak Regionally restricted euxassay_006129_09
TS23: rectum Weak Regionally restricted euxassay_006129_09
TS23: midgut Weak Regionally restricted euxassay_006129_09
Specimen euxassay_006129_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006129_10
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_10
TS23: midbrain mantle layer Moderate Graded euxassay_006129_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006129_10
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_10
TS23: rib Weak Regionally restricted euxassay_006129_10
TS23: thoracic ganglion Moderate Regionally restricted euxassay_006129_10
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006129_10
TS23: rectum Weak Regionally restricted euxassay_006129_10
TS23: midgut Weak Regionally restricted euxassay_006129_10
Specimen euxassay_006129_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_11
TS23: renal calyx Moderate Regionally restricted euxassay_006129_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_11
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_11
TS23: midbrain mantle layer Moderate Graded euxassay_006129_11
TS23: hypothalamus Strong Regionally restricted euxassay_006129_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_11
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006129_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_11
TS23: rib Weak Regionally restricted euxassay_006129_11
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006129_11
TS23: midgut Weak Regionally restricted euxassay_006129_11
TS23: rectum Weak Regionally restricted euxassay_006129_11
Specimen euxassay_006129_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Spotted euxassay_006129_12
TS23: renal calyx Moderate Regionally restricted euxassay_006129_12
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_12
TS23: midbrain mantle layer Moderate Graded euxassay_006129_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006129_12
TS23: hypothalamus Strong Regionally restricted euxassay_006129_12
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006129_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006129_12
TS23: rib Weak Regionally restricted euxassay_006129_12
TS23: cervical ganglion Moderate Regionally restricted euxassay_006129_12
TS23: midgut Weak Regionally restricted euxassay_006129_12
Specimen euxassay_006129_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: renal calyx Moderate Regionally restricted euxassay_006129_13
TS23: vagus ganglion Strong Uniform euxassay_006129_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006129_13
TS23: naris Moderate Regionally restricted euxassay_006129_13
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_13
TS23: midbrain mantle layer Moderate Graded euxassay_006129_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006129_13
TS23: hypothalamus Strong Regionally restricted euxassay_006129_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_13
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_13
TS23: midgut Weak Regionally restricted euxassay_006129_13
Specimen euxassay_006129_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Uniform euxassay_006129_14
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006129_14
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_14
TS23: midbrain mantle layer Moderate Graded euxassay_006129_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006129_14
TS23: hypothalamus Strong Regionally restricted euxassay_006129_14
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_006129_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006129_14
TS23: rib Weak Regionally restricted euxassay_006129_14
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_14
TS23: midgut Weak Regionally restricted euxassay_006129_14
Specimen euxassay_006129_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_006129_15
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_15
TS23: midbrain mantle layer Moderate Graded euxassay_006129_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_15
TS23: hypothalamus Moderate Regionally restricted euxassay_006129_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006129_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006129_15
TS23: rib Weak Regionally restricted euxassay_006129_15
TS23: maxilla Moderate Regionally restricted euxassay_006129_15
TS23: mandible Moderate Regionally restricted euxassay_006129_15
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_15
TS23: midgut Weak Regionally restricted euxassay_006129_15
Specimen euxassay_006129_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_006129_16
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006129_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006129_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_16
TS23: rib Weak Regionally restricted euxassay_006129_16
TS23: maxilla Moderate Regionally restricted euxassay_006129_16
TS23: mandible Moderate Regionally restricted euxassay_006129_16
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_006129_16
Specimen euxassay_006129_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_17
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006129_17
TS23: rib Weak Regionally restricted euxassay_006129_17
TS23: maxilla Moderate Regionally restricted euxassay_006129_17
TS23: mandible Moderate Regionally restricted euxassay_006129_17
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_006129_17
Specimen euxassay_006129_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_006129_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_18
TS23: rib Weak Regionally restricted euxassay_006129_18
TS23: mandible Moderate Regionally restricted euxassay_006129_18
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_006129_18
Specimen euxassay_006129_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006129_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_19
TS23: rib Moderate Regionally restricted euxassay_006129_19
TS23: maxilla Moderate Regionally restricted euxassay_006129_19
TS23: mandible Moderate Regionally restricted euxassay_006129_19
Specimen euxassay_006129_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_006129_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006129_20
TS23: rib Moderate Regionally restricted euxassay_006129_20
TS23: maxilla Moderate Regionally restricted euxassay_006129_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory