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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827018
Gene symbol: P4ha3
Gene name: procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
Probe: T36731
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007679_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_01
TS23: scapula Moderate Regionally restricted euxassay_007679_01
TS23: rib Weak Regionally restricted euxassay_007679_01
TS23: maxilla Moderate Regionally restricted euxassay_007679_01
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_01
TS23: basisphenoid bone Strong Regionally restricted euxassay_007679_01
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_01
Specimen euxassay_007679_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_02
TS23: scapula Weak Regionally restricted euxassay_007679_02
TS23: rib Weak Regionally restricted euxassay_007679_02
TS23: maxilla Moderate Regionally restricted euxassay_007679_02
TS23: mandible Moderate Regionally restricted euxassay_007679_02
TS23: fibula Weak Regionally restricted euxassay_007679_02
TS23: tibia Weak Regionally restricted euxassay_007679_02
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_02
TS23: lung Weak Regionally restricted euxassay_007679_02
Specimen euxassay_007679_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_03
TS23: scapula Moderate Regionally restricted euxassay_007679_03
TS23: rib Weak Regionally restricted euxassay_007679_03
TS23: maxilla Moderate Regionally restricted euxassay_007679_03
TS23: mandible Moderate Regionally restricted euxassay_007679_03
TS23: tibia Weak Regionally restricted euxassay_007679_03
TS23: fibula Weak Regionally restricted euxassay_007679_03
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_007679_03
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007679_03
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_007679_03
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007679_03
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_007679_03
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_03
TS23: basisphenoid bone Strong Regionally restricted euxassay_007679_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_03
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_03
TS23: lung Weak Regionally restricted euxassay_007679_03
Specimen euxassay_007679_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_04
TS23: rib Weak Regionally restricted euxassay_007679_04
TS23: maxilla Moderate Regionally restricted euxassay_007679_04
TS23: mandible Moderate Regionally restricted euxassay_007679_04
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_007679_04
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007679_04
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007679_04
TS23: fibula Weak Regionally restricted euxassay_007679_04
TS23: tibia Weak Regionally restricted euxassay_007679_04
TS23: basisphenoid bone Strong Regionally restricted euxassay_007679_04
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_04
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_04
TS23: lung Weak Regionally restricted euxassay_007679_04
Specimen euxassay_007679_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_05
TS23: maxilla Moderate Regionally restricted euxassay_007679_05
TS23: mandible Moderate Regionally restricted euxassay_007679_05
TS23: foot mesenchyme Weak Regionally restricted euxassay_007679_05
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_05
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_05
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007679_05
TS23: lung Weak Regionally restricted euxassay_007679_05
Specimen euxassay_007679_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_06
TS23: maxilla Moderate Regionally restricted euxassay_007679_06
TS23: mandible Moderate Regionally restricted euxassay_007679_06
TS23: foot mesenchyme Weak Regionally restricted euxassay_007679_06
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007679_06
TS23: lung Weak Regionally restricted euxassay_007679_06
Specimen euxassay_007679_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_07
TS23: mandible Weak Regionally restricted euxassay_007679_07
TS23: maxilla Weak Regionally restricted euxassay_007679_07
TS23: femur Weak Regionally restricted euxassay_007679_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_07
TS23: otic capsule Strong Regionally restricted euxassay_007679_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007679_07
TS23: lung Weak Regionally restricted euxassay_007679_07
TS23: clavicle Weak Regionally restricted euxassay_007679_07
Specimen euxassay_007679_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_08
TS23: maxilla Weak Regionally restricted euxassay_007679_08
TS23: mandible Weak Regionally restricted euxassay_007679_08
TS23: femur Weak Regionally restricted euxassay_007679_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_08
TS23: otic capsule Strong Regionally restricted euxassay_007679_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_08
TS23: lung Weak Regionally restricted euxassay_007679_08
TS23: clavicle Weak Regionally restricted euxassay_007679_08
Specimen euxassay_007679_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_09
TS23: maxilla Weak Regionally restricted euxassay_007679_09
TS23: mandible Weak Regionally restricted euxassay_007679_09
TS23: femur Weak Regionally restricted euxassay_007679_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_09
TS23: otic capsule Strong Regionally restricted euxassay_007679_09
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007679_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_09
TS23: aorta Weak Regionally restricted euxassay_007679_09
TS23: lung Weak Regionally restricted euxassay_007679_09
TS23: clavicle Weak Regionally restricted euxassay_007679_09
TS23: nasal septum Strong Regionally restricted euxassay_007679_09
Specimen euxassay_007679_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_10
TS23: mandible Moderate Regionally restricted euxassay_007679_10
TS23: maxilla Moderate Regionally restricted euxassay_007679_10
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_10
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007679_10
TS23: thyroid cartilage Moderate Regionally restricted euxassay_007679_10
TS23: aorta Weak Regionally restricted euxassay_007679_10
TS23: lung Weak Regionally restricted euxassay_007679_10
TS23: thymus primordium Moderate Regionally restricted euxassay_007679_10
TS23: nasal septum Strong Regionally restricted euxassay_007679_10
Specimen euxassay_007679_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_11
TS23: maxilla Moderate Regionally restricted euxassay_007679_11
TS23: mandible Moderate Regionally restricted euxassay_007679_11
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_007679_11
TS23: thyroid cartilage Weak Regionally restricted euxassay_007679_11
TS23: cricoid cartilage Weak Regionally restricted euxassay_007679_11
TS23: aorta Weak Regionally restricted euxassay_007679_11
TS23: lung Weak Regionally restricted euxassay_007679_11
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_007679_11
TS23: thymus primordium Moderate Regionally restricted euxassay_007679_11
TS23: nasal septum Strong Regionally restricted euxassay_007679_11
TS23: tail mesenchyme Weak Regionally restricted euxassay_007679_11
Specimen euxassay_007679_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_007679_12
TS23: maxilla Moderate Regionally restricted euxassay_007679_12
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007679_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007679_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_007679_12
TS23: thyroid cartilage Weak Regionally restricted euxassay_007679_12
TS23: aorta Weak Regionally restricted euxassay_007679_12
TS23: lung Weak Regionally restricted euxassay_007679_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_12
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_12
TS23: nasal septum Strong Regionally restricted euxassay_007679_12
TS23: tail mesenchyme Weak Regionally restricted euxassay_007679_12
Specimen euxassay_007679_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_13
TS23: maxilla Moderate Regionally restricted euxassay_007679_13
TS23: mandible Moderate Regionally restricted euxassay_007679_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_007679_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007679_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007679_13
TS23: thyroid cartilage Weak Regionally restricted euxassay_007679_13
TS23: cricoid cartilage Weak Regionally restricted euxassay_007679_13
TS23: aorta Weak Regionally restricted euxassay_007679_13
TS23: lung Weak Regionally restricted euxassay_007679_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_13
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_13
TS23: thymus primordium Moderate Regionally restricted euxassay_007679_13
TS23: nasal septum Strong Regionally restricted euxassay_007679_13
TS23: tail mesenchyme Weak Regionally restricted euxassay_007679_13
Specimen euxassay_007679_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_007679_14
TS23: maxilla Moderate Regionally restricted euxassay_007679_14
TS23: mandible Moderate Regionally restricted euxassay_007679_14
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007679_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_007679_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007679_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007679_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_007679_14
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_007679_14
TS23: thyroid cartilage Moderate Regionally restricted euxassay_007679_14
TS23: lung Weak Regionally restricted euxassay_007679_14
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_14
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_14
TS23: thymus primordium Moderate Regionally restricted euxassay_007679_14
TS23: nasal septum Strong Regionally restricted euxassay_007679_14
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_14
Specimen euxassay_007679_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_007679_15
TS23: mandible Moderate Regionally restricted euxassay_007679_15
TS23: maxilla Moderate Regionally restricted euxassay_007679_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007679_15
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007679_15
TS23: lung Weak Regionally restricted euxassay_007679_15
TS23: clavicle Weak Regionally restricted euxassay_007679_15
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_15
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_15
Specimen euxassay_007679_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_16
TS23: mandible Weak Regionally restricted euxassay_007679_16
TS23: maxilla Weak Regionally restricted euxassay_007679_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_16
TS23: otic capsule Strong Regionally restricted euxassay_007679_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_16
TS23: lung Weak Regionally restricted euxassay_007679_16
TS23: clavicle Weak Regionally restricted euxassay_007679_16
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_16
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_16
Specimen euxassay_007679_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_17
TS23: mandible Moderate Regionally restricted euxassay_007679_17
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_17
TS23: otic capsule Strong Regionally restricted euxassay_007679_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_17
TS23: lung Weak Regionally restricted euxassay_007679_17
TS23: clavicle Weak Regionally restricted euxassay_007679_17
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007679_17
TS23: spinal cord floor plate Strong Regionally restricted euxassay_007679_17
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_17
Specimen euxassay_007679_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_18
TS23: maxilla Moderate Regionally restricted euxassay_007679_18
TS23: mandible Moderate Regionally restricted euxassay_007679_18
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_18
TS23: otic capsule Strong Regionally restricted euxassay_007679_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_18
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_007679_18
TS23: lung Weak Regionally restricted euxassay_007679_18
TS23: clavicle Weak Regionally restricted euxassay_007679_18
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_18
Specimen euxassay_007679_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007679_19
TS23: maxilla Moderate Regionally restricted euxassay_007679_19
TS23: mandible Moderate Regionally restricted euxassay_007679_19
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007679_19
TS23: otic capsule Strong Regionally restricted euxassay_007679_19
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007679_19
TS23: lung Weak Regionally restricted euxassay_007679_19
TS23: tail mesenchyme Moderate Regionally restricted euxassay_007679_19
Specimen euxassay_007679_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_20
TS23: rib Weak Regionally restricted euxassay_007679_20
TS23: mandible Moderate Regionally restricted euxassay_007679_20
TS23: maxilla Moderate Regionally restricted euxassay_007679_20
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007679_20
TS23: pons ventricular layer Moderate Regionally restricted euxassay_007679_20
TS23: lung Weak Regionally restricted euxassay_007679_20
Specimen euxassay_007679_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_21
TS23: rib Weak Regionally restricted euxassay_007679_21
TS23: maxilla Moderate Regionally restricted euxassay_007679_21
TS23: mandible Moderate Regionally restricted euxassay_007679_21
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_007679_21
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_21
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_21
TS23: lung Weak Regionally restricted euxassay_007679_21
Specimen euxassay_007679_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_22
TS23: scapula Weak Regionally restricted euxassay_007679_22
TS23: rib Weak Regionally restricted euxassay_007679_22
TS23: mandible Weak Regionally restricted euxassay_007679_22
TS23: maxilla Weak Regionally restricted euxassay_007679_22
TS23: femur Weak Regionally restricted euxassay_007679_22
TS23: basisphenoid bone Strong Regionally restricted euxassay_007679_22
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_22
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_22
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_22
TS23: lung Weak Regionally restricted euxassay_007679_22
Specimen euxassay_007679_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_23
TS23: scapula Weak Regionally restricted euxassay_007679_23
TS23: rib Weak Regionally restricted euxassay_007679_23
TS23: femur Weak Regionally restricted euxassay_007679_23
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_007679_23
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007679_23
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_007679_23
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007679_23
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_23
TS23: basioccipital bone Strong Regionally restricted euxassay_007679_23
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_23
TS23: lung Weak Regionally restricted euxassay_007679_23
Specimen euxassay_007679_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_007679_24
TS23: scapula Moderate Regionally restricted euxassay_007679_24
TS23: rib Weak Regionally restricted euxassay_007679_24
TS23: foot mesenchyme Weak Regionally restricted euxassay_007679_24
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_007679_24
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007679_24
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_007679_24
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_007679_24
TS23: femur Weak Regionally restricted euxassay_007679_24
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007679_24
TS23: basisphenoid bone Strong Regionally restricted euxassay_007679_24
TS23: temporal bone Strong Regionally restricted euxassay_007679_24
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007679_24
TS23: lung Weak Regionally restricted euxassay_007679_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory