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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827008
Gene symbol: Otx2
Gene name: orthodenticle homeobox 2
Probe: MGC clone 27657
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_001203_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_001203_01
Specimen euxassay_001203_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_001203_02
TS23: 4th ventricle Strong Uniform euxassay_001203_02
TS23: choroid plexus Present euxassay_001203_02
Specimen euxassay_001203_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_001203_03
TS23: 4th ventricle Strong Uniform euxassay_001203_03
TS23: choroid plexus Present euxassay_001203_03
Specimen euxassay_001203_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_04
TS23: choroid plexus Present euxassay_001203_04
TS23: cochlea Strong Regionally restricted euxassay_001203_04
Specimen euxassay_001203_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_05
TS23: choroid plexus Present euxassay_001203_05
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_05
TS23: cochlea Strong Regionally restricted euxassay_001203_05
Specimen euxassay_001203_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_06
TS23: choroid plexus Present euxassay_001203_06
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_06
TS23: cochlea Strong Regionally restricted euxassay_001203_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_06
TS23: olfactory epithelium Weak Regionally restricted euxassay_001203_06
Specimen euxassay_001203_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_07
TS23: choroid plexus Present euxassay_001203_07
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_07
TS23: cochlea Strong Regionally restricted euxassay_001203_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_07
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_001203_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_07
Specimen euxassay_001203_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_08
TS23: choroid plexus Present euxassay_001203_08
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_08
TS23: cochlea Strong Regionally restricted euxassay_001203_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_08
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_001203_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_08
Specimen euxassay_001203_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_09
TS23: choroid plexus Present euxassay_001203_09
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_09
TS23: cochlea Strong Regionally restricted euxassay_001203_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_09
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_001203_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_09
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_09
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_09
TS23: external naris Strong Regionally restricted euxassay_001203_09
Specimen euxassay_001203_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_10
TS23: choroid plexus Present euxassay_001203_10
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_10
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_001203_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_10
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_10
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_10
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_001203_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_10
TS23: external naris Strong Regionally restricted euxassay_001203_10
Specimen euxassay_001203_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_11
TS23: choroid plexus Present euxassay_001203_11
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_11
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_001203_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_11
Specimen euxassay_001203_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_12
TS23: choroid plexus Present euxassay_001203_12
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_001203_12
Specimen euxassay_001203_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_13
TS23: choroid plexus Present euxassay_001203_13
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_001203_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_13
Specimen euxassay_001203_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_14
TS23: choroid plexus Present euxassay_001203_14
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_14
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_001203_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_14
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_14
Specimen euxassay_001203_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_15
TS23: choroid plexus Present euxassay_001203_15
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_15
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_001203_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_15
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_15
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_001203_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_15
TS23: external naris Strong Regionally restricted euxassay_001203_15
Specimen euxassay_001203_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_16
TS23: choroid plexus Present euxassay_001203_16
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_16
TS23: cochlea Strong Regionally restricted euxassay_001203_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001203_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_16
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_16
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_001203_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_16
TS23: external naris Strong Regionally restricted euxassay_001203_16
Specimen euxassay_001203_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_17
TS23: choroid plexus Present euxassay_001203_17
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_17
TS23: cochlea Strong Regionally restricted euxassay_001203_17
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_001203_17
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_001203_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001203_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_001203_17
Specimen euxassay_001203_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_18
TS23: choroid plexus Present euxassay_001203_18
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_18
TS23: cochlea Strong Regionally restricted euxassay_001203_18
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_001203_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001203_18
Specimen euxassay_001203_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_19
TS23: choroid plexus Present euxassay_001203_19
TS23: lateral ventricle choroid plexus Strong Uniform euxassay_001203_19
TS23: cochlea Strong Regionally restricted euxassay_001203_19
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_001203_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_19
Specimen euxassay_001203_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Uniform euxassay_001203_20
TS23: choroid plexus Present euxassay_001203_20
TS23: cochlea Strong Regionally restricted euxassay_001203_20
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_001203_20
Specimen euxassay_001203_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_001203_21
TS23: 4th ventricle Strong Uniform euxassay_001203_21
TS23: choroid plexus Present euxassay_001203_21
TS23: cochlea Strong Regionally restricted euxassay_001203_21
Specimen euxassay_001203_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_001203_22
TS23: 4th ventricle Strong Uniform euxassay_001203_22
TS23: choroid plexus Present euxassay_001203_22
Specimen euxassay_001203_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_001203_23
TS23: 4th ventricle Strong Uniform euxassay_001203_23
TS23: choroid plexus Present euxassay_001203_23
Specimen euxassay_001203_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_001203_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory