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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826704
Gene symbol: Nhlh1
Gene name: nescient helix loop helix 1
Probe: MGC clone 54645
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 6A - Nhlh1: embryonic day 14.5 (more )
Note: The probe used to generate this specimen was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex intermediate zone Present 6A Nhlh1 , 6A composite
TS23: cerebral cortex subventricular zone Present 6A Nhlh1 , 6A composite
Specimen 6D - Nhlh1: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay.
Structure Level Pattern Image Note
TS23: dorsal grey horn Present Regionally restricted 6D Expression is present in the central nucleus of the dorsal horn (Rexed's layers 3 and 4).
Specimen euxassay_003709_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_003709_01
TS23: neural retina Moderate Single cells euxassay_003709_01
Specimen euxassay_003709_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_003709_02
TS23: neural retina Moderate Single cells euxassay_003709_02
Specimen euxassay_003709_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_003709_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003709_03
Specimen euxassay_003709_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_003709_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003709_04
Specimen euxassay_003709_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Uniform euxassay_003709_05
TS23: cerebral cortex marginal layer Strong Uniform euxassay_003709_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_05
TS23: trigeminal ganglion Weak Regionally restricted euxassay_003709_05
Specimen euxassay_003709_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_003709_06
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_06
Specimen euxassay_003709_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Uniform euxassay_003709_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_003709_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_003709_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003709_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003709_07
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_07
Specimen euxassay_003709_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_08
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_003709_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_08
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_003709_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_003709_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003709_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_08
Specimen euxassay_003709_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_09
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_09
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_09
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_003709_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003709_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003709_09
Specimen euxassay_003709_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_10
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_10
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_10
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_003709_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003709_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003709_10
Specimen euxassay_003709_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_003709_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_003709_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003709_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003709_11
Specimen euxassay_003709_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_003709_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_003709_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003709_12
Specimen euxassay_003709_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_13
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_003709_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_003709_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003709_13
Specimen euxassay_003709_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_14
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_003709_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_003709_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_14
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003709_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003709_14
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_003709_14
Specimen euxassay_003709_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_003709_15
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_15
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_15
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_003709_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003709_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_003709_15
Specimen euxassay_003709_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_16
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_16
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_003709_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_16
TS23: trigeminal ganglion Weak Regionally restricted euxassay_003709_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003709_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_16
Specimen euxassay_003709_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_17
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_003709_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003709_17
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003709_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_17
Specimen euxassay_003709_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_003709_18
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003709_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003709_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_003709_18
Specimen euxassay_003709_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003709_19
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003709_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003709_19
Specimen euxassay_003709_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_20
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_20
Specimen euxassay_003709_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_003709_21
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_003709_21
TS23: neural retina Moderate Single cells euxassay_003709_21
Specimen euxassay_003709_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_22
TS23: neural retina Moderate Single cells euxassay_003709_22
Specimen euxassay_003709_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_003709_23
TS23: neural retina Weak Regionally restricted euxassay_003709_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory