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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826009
Gene symbol: Lrrtm3
Gene name: leucine rich repeat transmembrane neuronal 3
Probe: IMAGE clone 30044805
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006601_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_01
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_01
Specimen euxassay_006601_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_02
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_02
Specimen euxassay_006601_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_03
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_03
TS23: trigeminal ganglion Strong Single cells euxassay_006601_03
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_006601_03
Specimen euxassay_006601_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_04
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_04
TS23: trigeminal ganglion Strong Single cells euxassay_006601_04
TS23: vibrissa Moderate Regionally restricted euxassay_006601_04
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_04
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_006601_04
Specimen euxassay_006601_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_05
TS23: trigeminal ganglion Strong Single cells euxassay_006601_05
TS23: vibrissa Moderate Regionally restricted euxassay_006601_05
TS23: stomach Strong Regionally restricted euxassay_006601_05 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_05
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_05
Specimen euxassay_006601_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006601_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_06
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_06
TS23: mandible Moderate Regionally restricted euxassay_006601_06
TS23: trigeminal ganglion Strong Single cells euxassay_006601_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_06
TS23: vibrissa Moderate Regionally restricted euxassay_006601_06
TS23: stomach Strong Regionally restricted euxassay_006601_06 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_06
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_06
Specimen euxassay_006601_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_07
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_07
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_07
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_07
TS23: upper lip Strong Regionally restricted euxassay_006601_07
TS23: mandible Moderate Regionally restricted euxassay_006601_07
TS23: palatal shelf Strong Regionally restricted euxassay_006601_07
TS23: trigeminal ganglion Strong Single cells euxassay_006601_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_07
TS23: vibrissa Moderate Regionally restricted euxassay_006601_07
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_07
Specimen euxassay_006601_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_08
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_08
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_08
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_08
TS23: lower lip Strong Regionally restricted euxassay_006601_08
TS23: upper lip Strong Regionally restricted euxassay_006601_08
TS23: palatal shelf Strong Regionally restricted euxassay_006601_08
TS23: trigeminal ganglion Strong Single cells euxassay_006601_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_08
TS23: vibrissa Moderate Regionally restricted euxassay_006601_08
TS23: stomach Strong Regionally restricted euxassay_006601_08 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_08
TS23: midgut Weak Regionally restricted euxassay_006601_08 smooth muscle
Specimen euxassay_006601_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_09
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_09
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_09
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_09
TS23: lower lip Strong Regionally restricted euxassay_006601_09
TS23: upper lip Strong Regionally restricted euxassay_006601_09
TS23: palatal shelf Strong Regionally restricted euxassay_006601_09
TS23: trigeminal ganglion Strong Single cells euxassay_006601_09
TS23: stomach Strong Regionally restricted euxassay_006601_09 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_09
TS23: midgut Weak Regionally restricted euxassay_006601_09 smooth muscle
Specimen euxassay_006601_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_10
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_10
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_10
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_10
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_10
TS23: lower lip Strong Regionally restricted euxassay_006601_10
TS23: upper lip Strong Regionally restricted euxassay_006601_10
TS23: palatal shelf Strong Regionally restricted euxassay_006601_10
TS23: stomach Moderate Regionally restricted euxassay_006601_10 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_10
TS23: midgut Weak Regionally restricted euxassay_006601_10 smooth muscle
Specimen euxassay_006601_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_11
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_11
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_11
TS23: lower lip Strong Regionally restricted euxassay_006601_11
TS23: upper lip Strong Regionally restricted euxassay_006601_11
TS23: palatal shelf Strong Regionally restricted euxassay_006601_11
TS23: midgut Weak Regionally restricted euxassay_006601_11 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_11
Specimen euxassay_006601_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_12
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_12
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_12
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_12
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_12
TS23: lower lip Strong Regionally restricted euxassay_006601_12
TS23: upper lip Strong Regionally restricted euxassay_006601_12
TS23: midgut Weak Regionally restricted euxassay_006601_12 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_12
Specimen euxassay_006601_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006601_13
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_006601_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_13
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_13
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_13
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_13
TS23: midgut Weak Regionally restricted euxassay_006601_13 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_13
Specimen euxassay_006601_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_14
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_14
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_14
TS23: midgut Weak Regionally restricted euxassay_006601_14 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_14
Specimen euxassay_006601_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006601_15
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_15
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_15
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_15
TS23: midgut Weak Regionally restricted euxassay_006601_15 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_15
Specimen euxassay_006601_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006601_16
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_16
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_16
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_16
TS23: palatal shelf Strong Regionally restricted euxassay_006601_16
TS23: midgut Weak Regionally restricted euxassay_006601_16 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_16
Specimen euxassay_006601_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006601_17
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_006601_17
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_17
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_006601_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_17
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_17
TS23: ventral grey horn Strong Regionally restricted euxassay_006601_17
TS23: mandible Moderate Regionally restricted euxassay_006601_17
TS23: palatal shelf Strong Regionally restricted euxassay_006601_17
TS23: midgut Weak Regionally restricted euxassay_006601_17 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_17
Specimen euxassay_006601_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_006601_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006601_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_18
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_18
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_18
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006601_18
TS23: mandible Moderate Regionally restricted euxassay_006601_18
TS23: palatal shelf Strong Regionally restricted euxassay_006601_18
TS23: trigeminal ganglion Strong Single cells euxassay_006601_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_18
TS23: midgut Weak Regionally restricted euxassay_006601_18 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_18
Specimen euxassay_006601_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_19
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_19
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006601_19
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006601_19
TS23: pons mantle layer Strong Regionally restricted euxassay_006601_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_19
TS23: lower lip Strong Regionally restricted euxassay_006601_19
TS23: upper lip Strong Regionally restricted euxassay_006601_19
TS23: mandible Moderate Regionally restricted euxassay_006601_19
TS23: palatal shelf Strong Regionally restricted euxassay_006601_19
TS23: trigeminal ganglion Strong Single cells euxassay_006601_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_19
TS23: midgut Weak Regionally restricted euxassay_006601_19 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_19
Specimen euxassay_006601_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006601_20
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_20
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_20
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_20
TS23: lower lip Strong Regionally restricted euxassay_006601_20
TS23: upper lip Strong Regionally restricted euxassay_006601_20
TS23: palatal shelf Strong Regionally restricted euxassay_006601_20
TS23: trigeminal ganglion Strong Single cells euxassay_006601_20
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_20
TS23: midgut Weak Regionally restricted euxassay_006601_20 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_20
Specimen euxassay_006601_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_21
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006601_21
TS23: lower lip Strong Regionally restricted euxassay_006601_21
TS23: upper lip Strong Regionally restricted euxassay_006601_21
TS23: mandible Moderate Regionally restricted euxassay_006601_21
TS23: palatal shelf Strong Regionally restricted euxassay_006601_21
TS23: trigeminal ganglion Strong Single cells euxassay_006601_21
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006601_21
TS23: midgut Weak Regionally restricted euxassay_006601_21 smooth muscle
TS23: smooth muscle tissue Present euxassay_006601_21
Specimen euxassay_006601_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_22
TS23: upper lip Strong Regionally restricted euxassay_006601_22
TS23: trigeminal ganglion Strong Single cells euxassay_006601_22
TS23: vibrissa Moderate Regionally restricted euxassay_006601_22
Specimen euxassay_006601_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_23
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_23
TS23: upper lip Strong Regionally restricted euxassay_006601_23
TS23: mandible Moderate Regionally restricted euxassay_006601_23
TS23: maxilla Moderate Regionally restricted euxassay_006601_23
TS23: trigeminal ganglion Moderate Single cells euxassay_006601_23
TS23: vibrissa Moderate Regionally restricted euxassay_006601_23
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_23
Specimen euxassay_006601_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_006601_24
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006601_24
TS23: mandible Moderate Regionally restricted euxassay_006601_24
TS23: vibrissa Moderate Regionally restricted euxassay_006601_24
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006601_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory