About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825840
Gene symbol: Krt5
Gene name: keratin 5
Probe: MGC clone 8116
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004799_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_01
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_01
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_01
Specimen euxassay_004799_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_02
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_02
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_02
Specimen euxassay_004799_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_03
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_03
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_03
Specimen euxassay_004799_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_04
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_04
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_04
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_04
Specimen euxassay_004799_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_05
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_05
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_05
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_05
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_05
Specimen euxassay_004799_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_06
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_06
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_06
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_06
TS23: oral epithelium Strong Regionally restricted euxassay_004799_06
Specimen euxassay_004799_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_07
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_07
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_07
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_07
TS23: thymus primordium Strong Spotted euxassay_004799_07
TS23: oral epithelium Strong Regionally restricted euxassay_004799_07
Specimen euxassay_004799_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_08
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_08
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_08
TS23: thymus primordium Strong Spotted euxassay_004799_08
TS23: pharynx Strong Regionally restricted euxassay_004799_08
TS23: esophagus Strong Regionally restricted euxassay_004799_08
TS23: oral epithelium Strong Regionally restricted euxassay_004799_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_08
Specimen euxassay_004799_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_09
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_09
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_09
TS23: thymus primordium Strong Spotted euxassay_004799_09
TS23: pharynx Strong Regionally restricted euxassay_004799_09
TS23: oral epithelium Strong Regionally restricted euxassay_004799_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_09
TS23: trachea Moderate Regionally restricted euxassay_004799_09
Specimen euxassay_004799_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_10
TS23: thymus primordium Strong Spotted euxassay_004799_10
TS23: pharynx Strong Regionally restricted euxassay_004799_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_10
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_10
TS23: oral epithelium Strong Regionally restricted euxassay_004799_10
TS23: bladder Moderate Regionally restricted euxassay_004799_10
TS23: urinary system Strong Regionally restricted euxassay_004799_10
TS23: urethra Present euxassay_004799_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_10
Specimen euxassay_004799_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_11
TS23: thymus primordium Strong Spotted euxassay_004799_11
TS23: pharynx Strong Regionally restricted euxassay_004799_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_11
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_11
TS23: oral epithelium Strong Regionally restricted euxassay_004799_11
TS23: bladder Moderate Regionally restricted euxassay_004799_11
TS23: urinary system Strong Regionally restricted euxassay_004799_11
TS23: urethra Present euxassay_004799_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_11
Specimen euxassay_004799_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_12
TS23: pharynx Strong Regionally restricted euxassay_004799_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_12
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_12
TS23: oral epithelium Strong Regionally restricted euxassay_004799_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_12
Specimen euxassay_004799_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_13
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_13
TS23: oral epithelium Strong Regionally restricted euxassay_004799_13
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_004799_13
Specimen euxassay_004799_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_14
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_14
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_14
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_14
TS23: oral epithelium Strong Regionally restricted euxassay_004799_14
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_004799_14
Specimen euxassay_004799_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_15
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_15
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_15
TS23: oral epithelium Strong Regionally restricted euxassay_004799_15
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_004799_15
Specimen euxassay_004799_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_16
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_004799_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_004799_16
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_16
TS23: oral epithelium Strong Regionally restricted euxassay_004799_16
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_004799_16
Specimen euxassay_004799_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_17
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_17
TS23: upper jaw molar Strong Regionally restricted euxassay_004799_17
TS23: lower jaw molar Strong Regionally restricted euxassay_004799_17
TS23: tongue epithelium Strong Regionally restricted euxassay_004799_17
TS23: oral epithelium Strong Regionally restricted euxassay_004799_17
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_004799_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_17
Specimen euxassay_004799_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_18
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_18
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_18
TS23: upper jaw molar Strong Regionally restricted euxassay_004799_18
TS23: oral epithelium Strong Regionally restricted euxassay_004799_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_18
Specimen euxassay_004799_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_19
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_19
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_19
TS23: oral epithelium Strong Regionally restricted euxassay_004799_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004799_19
Specimen euxassay_004799_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_20
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_20
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_20
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_20
TS23: oral epithelium Strong Regionally restricted euxassay_004799_20
Specimen euxassay_004799_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_21
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_21
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_21
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_21
Specimen euxassay_004799_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_22
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_004799_22
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_22
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_22
Specimen euxassay_004799_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_004799_23
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_23
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_23
TS23: naso-lacrimal duct Strong Regionally restricted euxassay_004799_23
Specimen euxassay_004799_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_004799_24
TS23: conjunctival sac Strong Regionally restricted euxassay_004799_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory