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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825671
Gene symbol: Jag1
Gene name: jagged 1
Probe: T63337
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S9 - Jag1: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: liver Present Single cells Expression is present in single cells in which the intercellular distance between stained cells is much larger than the cell diameter of an individual cell. A thumbnail photo of the staining is contained in the table.

Specimen euxassay_015945_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_015945_01
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_01
TS23: epidermis Moderate Regionally restricted euxassay_015945_01
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_015945_01

Specimen euxassay_015945_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_015945_02
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_02
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_015945_02
TS23: epidermis Moderate Regionally restricted euxassay_015945_02

Specimen euxassay_015945_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_015945_03
TS23: epidermis Moderate Regionally restricted euxassay_015945_03

Specimen euxassay_015945_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_015945_04
TS23: epidermis Moderate Regionally restricted euxassay_015945_04

Specimen euxassay_015945_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_05
TS23: epidermis Moderate Regionally restricted euxassay_015945_05

Specimen euxassay_015945_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_015945_06
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_06
TS23: epidermis Moderate Regionally restricted euxassay_015945_06

Specimen euxassay_015945_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_07
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_07
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_07
TS23: epidermis Moderate Regionally restricted euxassay_015945_07

Specimen euxassay_015945_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_08
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_08
TS23: metanephros Strong Regionally restricted euxassay_015945_08
TS23: pons ventricular layer Strong Single cells euxassay_015945_08
TS23: epidermis Weak Regionally restricted euxassay_015945_08

Specimen euxassay_015945_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_09
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_09
TS23: metanephros Strong Regionally restricted euxassay_015945_09
TS23: epidermis Weak Regionally restricted euxassay_015945_09

Specimen euxassay_015945_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_10
TS23: diencephalon lateral wall ventricular layer Strong Single cells euxassay_015945_10
TS23: metanephros Strong Regionally restricted euxassay_015945_10
TS23: aorta Weak Regionally restricted euxassay_015945_10
TS23: pons ventricular layer Weak Single cells euxassay_015945_10
TS23: medulla oblongata basal plate ventricular layer Weak Single cells euxassay_015945_10
TS23: epidermis Weak Regionally restricted euxassay_015945_10

Specimen euxassay_015945_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_11
TS23: pineal primordium Strong Single cells euxassay_015945_11
TS23: metanephros Strong Regionally restricted euxassay_015945_11
TS23: aorta Weak Regionally restricted euxassay_015945_11
TS23: epidermis Weak Regionally restricted euxassay_015945_11

Specimen euxassay_015945_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_12
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_12
TS23: aorta Weak Regionally restricted euxassay_015945_12
TS23: epidermis Weak Regionally restricted euxassay_015945_12

Specimen euxassay_015945_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_13
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_13
TS23: aorta Weak Regionally restricted euxassay_015945_13
TS23: pons ventricular layer Moderate Single cells euxassay_015945_13
TS23: medulla oblongata basal plate ventricular layer Moderate Single cells euxassay_015945_13
TS23: intermediate grey horn Moderate Single cells euxassay_015945_13
TS23: epidermis Weak Regionally restricted euxassay_015945_13

Specimen euxassay_015945_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_14
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_14
TS23: aorta Weak Regionally restricted euxassay_015945_14
TS23: pons ventricular layer Moderate Single cells euxassay_015945_14
TS23: intermediate grey horn Moderate Single cells euxassay_015945_14
TS23: epidermis Weak Regionally restricted euxassay_015945_14

Specimen euxassay_015945_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_015945_15
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_015945_15
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_15
TS23: aorta Weak Regionally restricted euxassay_015945_15
TS23: pons ventricular layer Weak Single cells euxassay_015945_15
TS23: intermediate grey horn Strong Single cells euxassay_015945_15
TS23: epidermis Weak Regionally restricted euxassay_015945_15

Specimen euxassay_015945_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_015945_16
TS23: midbrain ventricular layer Strong Single cells euxassay_015945_16
TS23: aorta Weak Regionally restricted euxassay_015945_16
TS23: epidermis Weak Regionally restricted euxassay_015945_16

Specimen euxassay_015945_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_17
TS23: metanephros Strong Regionally restricted euxassay_015945_17
TS23: epidermis Weak Regionally restricted euxassay_015945_17

Specimen euxassay_015945_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metanephros Moderate Regionally restricted euxassay_015945_18
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_015945_18
TS23: epidermis Weak Regionally restricted euxassay_015945_18

Specimen euxassay_015945_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_015945_19
TS23: metanephros Moderate Regionally restricted euxassay_015945_19
TS23: epidermis Weak Regionally restricted euxassay_015945_19

Specimen euxassay_015945_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metanephros Moderate Regionally restricted euxassay_015945_20
TS23: epidermis Weak Regionally restricted euxassay_015945_20

Specimen euxassay_015945_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_015945_21
TS23: metanephros Moderate Regionally restricted euxassay_015945_21
TS23: epidermis Weak Regionally restricted euxassay_015945_21
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_015945_21

Specimen euxassay_015945_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_015945_22
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_015945_22

Specimen euxassay_015945_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_015945_23
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_015945_23
TS23: lens Moderate Regionally restricted euxassay_015945_23


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
10/22/2024
MGI 6.24
The Jackson Laboratory