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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825452
Gene symbol: Hs3st1
Gene name: heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Probe: T30051
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011898_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_011898_01
TS23: rib Weak Regionally restricted euxassay_011898_01
TS23: tibia Weak Regionally restricted euxassay_011898_01
TS23: femur Weak Regionally restricted euxassay_011898_01
TS23: humerus Weak Regionally restricted euxassay_011898_01
TS23: scapula Weak Regionally restricted euxassay_011898_01
Specimen euxassay_011898_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_011898_02
TS23: rib Weak Regionally restricted euxassay_011898_02
TS23: femur Weak Regionally restricted euxassay_011898_02
TS23: humerus Weak Regionally restricted euxassay_011898_02
Specimen euxassay_011898_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_011898_03
TS23: rib Weak Regionally restricted euxassay_011898_03
TS23: femur Weak Regionally restricted euxassay_011898_03
Specimen euxassay_011898_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011898_04
TS23: rib Weak Regionally restricted euxassay_011898_04
TS23: femur Weak Regionally restricted euxassay_011898_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_011898_04
Specimen euxassay_011898_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_011898_05
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011898_05
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011898_05
TS23: hip Weak Regionally restricted euxassay_011898_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_011898_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_011898_05
Specimen euxassay_011898_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_011898_06
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_011898_06
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_06
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011898_06
TS23: hip Weak Regionally restricted euxassay_011898_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_011898_06
Specimen euxassay_011898_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_07
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_07
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_011898_07
Specimen euxassay_011898_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_08
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_08
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_011898_08
Specimen euxassay_011898_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_09
TS23: spinal cord ventricular layer Weak Regionally restricted euxassay_011898_09
Specimen euxassay_011898_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_011898_10
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_10
TS23: hip Weak Regionally restricted euxassay_011898_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_011898_10
Specimen euxassay_011898_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_011898_11
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_011898_11
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_11
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_11
TS23: hip Weak Regionally restricted euxassay_011898_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_011898_11
Specimen euxassay_011898_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_011898_12
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011898_12
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011898_12
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_12
Specimen euxassay_011898_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_011898_13
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011898_13
TS23: rib Weak Regionally restricted euxassay_011898_13
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011898_13
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_13
TS23: femur Weak Regionally restricted euxassay_011898_13
Specimen euxassay_011898_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_011898_14
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011898_14
TS23: rib Weak Regionally restricted euxassay_011898_14
TS23: Meckel's cartilage Weak Regionally restricted euxassay_011898_14
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_011898_14
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_011898_14
TS23: femur Weak Regionally restricted euxassay_011898_14
Specimen euxassay_011898_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_011898_15
TS23: femur Weak Regionally restricted euxassay_011898_15
TS23: foot mesenchyme Weak Regionally restricted euxassay_011898_15
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_011898_15
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_011898_15
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_011898_15
TS23: humerus Weak Regionally restricted euxassay_011898_15
TS23: scapula Weak Regionally restricted euxassay_011898_15
Specimen euxassay_011898_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_011898_16
TS23: tibia Weak Regionally restricted euxassay_011898_16
TS23: fibula Weak Regionally restricted euxassay_011898_16
TS23: femur Weak Regionally restricted euxassay_011898_16
TS23: humerus Weak Regionally restricted euxassay_011898_16
Specimen euxassay_011898_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_011898_17
TS23: tibia Weak Regionally restricted euxassay_011898_17
TS23: fibula Weak Regionally restricted euxassay_011898_17
Specimen euxassay_011898_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tibia Weak Regionally restricted euxassay_011898_18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/30/2025
MGI 6.24 		The Jackson Laboratory