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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825436
Gene symbol: Hoxd3
Gene name: homeobox D3
Probe: T35465
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008983_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_04
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_04
TS23: stomach Strong Regionally restricted euxassay_008983_04
Specimen euxassay_008983_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_05
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_05
TS23: stomach Strong Regionally restricted euxassay_008983_05
Specimen euxassay_008983_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_06
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_06
TS23: renal calyx Moderate Regionally restricted euxassay_008983_06
TS23: stomach Strong Regionally restricted euxassay_008983_06
Specimen euxassay_008983_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_07
TS23: renal calyx Moderate Regionally restricted euxassay_008983_07
TS23: renal pelvis Moderate Regionally restricted euxassay_008983_07
TS23: stomach Strong Regionally restricted euxassay_008983_07
Specimen euxassay_008983_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_08
TS23: renal calyx Moderate Regionally restricted euxassay_008983_08
TS23: stomach Strong Regionally restricted euxassay_008983_08
TS23: midgut Strong Regionally restricted euxassay_008983_08
Specimen euxassay_008983_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_09
TS23: ureter Moderate Regionally restricted euxassay_008983_09
TS23: stomach Strong Regionally restricted euxassay_008983_09
TS23: midgut Strong Regionally restricted euxassay_008983_09
Specimen euxassay_008983_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_10
TS23: midgut Strong Regionally restricted euxassay_008983_10
Specimen euxassay_008983_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_11
TS23: midgut Strong Regionally restricted euxassay_008983_11
Specimen euxassay_008983_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_12
TS23: ureter Moderate Regionally restricted euxassay_008983_12
TS23: midgut Strong Regionally restricted euxassay_008983_12
Specimen euxassay_008983_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008983_13
TS23: ureter Moderate Regionally restricted euxassay_008983_13
TS23: midgut Strong Regionally restricted euxassay_008983_13
TS23: rectum Strong Regionally restricted euxassay_008983_13
Specimen euxassay_008983_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_14
TS23: renal calyx Moderate Regionally restricted euxassay_008983_14
TS23: midgut Strong Regionally restricted euxassay_008983_14
Specimen euxassay_008983_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_15
TS23: renal calyx Moderate Regionally restricted euxassay_008983_15
TS23: collecting duct Moderate Regionally restricted euxassay_008983_15
TS23: midgut Strong Regionally restricted euxassay_008983_15
Specimen euxassay_008983_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008983_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008983_16
TS23: renal calyx Moderate Regionally restricted euxassay_008983_16
TS23: midgut Strong Regionally restricted euxassay_008983_16
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory