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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825414
Gene symbol: Hoxa13
Gene name: homeobox A13
Probe: T5309
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002857_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand dermis Moderate Regionally restricted euxassay_002857_01
Specimen euxassay_002857_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand dermis Moderate Regionally restricted euxassay_002857_02
Specimen euxassay_002857_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand dermis Moderate Regionally restricted euxassay_002857_03
TS23: foot dermis Moderate Regionally restricted euxassay_002857_03
Specimen euxassay_002857_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Moderate Regionally restricted euxassay_002857_04
TS23: hand dermis Moderate Regionally restricted euxassay_002857_04
Specimen euxassay_002857_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_05
TS23: hand dermis Strong Regionally restricted euxassay_002857_05
Specimen euxassay_002857_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_06
TS23: hand dermis Strong Regionally restricted euxassay_002857_06
Specimen euxassay_002857_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_07
TS23: hand dermis Strong Regionally restricted euxassay_002857_07
Specimen euxassay_002857_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_08
TS23: hand dermis Strong Regionally restricted euxassay_002857_08
Specimen euxassay_002857_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_09
Specimen euxassay_002857_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder Weak Regionally restricted euxassay_002857_12
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_002857_12
Specimen euxassay_002857_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder Moderate Regionally restricted euxassay_002857_13
TS23: urethra Strong Regionally restricted euxassay_002857_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_002857_13
Specimen euxassay_002857_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder Moderate Regionally restricted euxassay_002857_14
TS23: urethra Strong Regionally restricted euxassay_002857_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_002857_14
Specimen euxassay_002857_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: bladder Moderate Regionally restricted euxassay_002857_15
TS23: urethra Weak Regionally restricted euxassay_002857_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: nephric duct of male Weak Regionally restricted euxassay_002857_15
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_002857_15
Specimen euxassay_002857_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_18
Specimen euxassay_002857_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_19
Specimen euxassay_002857_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_20
Specimen euxassay_002857_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_21
TS23: foot mesenchyme Moderate Regionally restricted euxassay_002857_21
Specimen euxassay_002857_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Strong Regionally restricted euxassay_002857_22
TS23: foot mesenchyme Moderate Regionally restricted euxassay_002857_22
TS23: hand mesenchyme Moderate Regionally restricted euxassay_002857_22
Specimen euxassay_002857_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot dermis Moderate Regionally restricted euxassay_002857_23
TS23: hand dermis Moderate Regionally restricted euxassay_002857_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory