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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825336
Gene symbol: Hcn3
Gene name: hyperpolarization-activated, cyclic nucleotide-gated K+ 3
Probe: MGC clone 25272
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002974_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_04
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_04
TS23: hindbrain Weak Uniform euxassay_002974_04
Specimen euxassay_002974_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_05
TS23: facial ganglion Moderate Regionally restricted euxassay_002974_05
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_05
TS23: hindbrain Weak Uniform euxassay_002974_05
Specimen euxassay_002974_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_06
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_06
TS23: midbrain Weak Uniform euxassay_002974_06
TS23: hindbrain Weak Uniform euxassay_002974_06
Specimen euxassay_002974_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002974_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_07
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_07
TS23: midbrain Weak Uniform euxassay_002974_07
TS23: hindbrain Weak Uniform euxassay_002974_07
Specimen euxassay_002974_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002974_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002974_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_08
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_08
TS23: midbrain Weak Uniform euxassay_002974_08
TS23: hindbrain Weak Uniform euxassay_002974_08
TS23: diencephalon Weak Uniform euxassay_002974_08
Specimen euxassay_002974_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002974_09
TS23: vagus ganglion Moderate Regionally restricted euxassay_002974_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_09
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_09
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_09
TS23: hindbrain Weak Uniform euxassay_002974_09
TS23: midbrain Weak Uniform euxassay_002974_09
TS23: diencephalon Weak Uniform euxassay_002974_09
Specimen euxassay_002974_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_10
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_10
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_10
TS23: spinal cord Weak Uniform euxassay_002974_10
TS23: midbrain Weak Uniform euxassay_002974_10
TS23: hindbrain Weak Uniform euxassay_002974_10
TS23: diencephalon Weak Uniform euxassay_002974_10
Specimen euxassay_002974_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_11
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_11
TS23: spinal cord Weak Uniform euxassay_002974_11
TS23: midbrain Weak Uniform euxassay_002974_11
TS23: hindbrain Weak Uniform euxassay_002974_11
TS23: diencephalon Weak Uniform euxassay_002974_11
Specimen euxassay_002974_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_12
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_12
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_12
TS23: spinal cord Weak Uniform euxassay_002974_12
TS23: midbrain Weak Uniform euxassay_002974_12
TS23: hindbrain Weak Uniform euxassay_002974_12
TS23: diencephalon Weak Uniform euxassay_002974_12
Specimen euxassay_002974_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_13
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_13
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_13
TS23: spinal cord Weak Uniform euxassay_002974_13
TS23: midbrain Weak Uniform euxassay_002974_13
TS23: hindbrain Weak Uniform euxassay_002974_13
TS23: diencephalon Weak Uniform euxassay_002974_13
Specimen euxassay_002974_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_14
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_14
TS23: spinal cord Weak Uniform euxassay_002974_14
TS23: midbrain Weak Uniform euxassay_002974_14
TS23: hindbrain Weak Uniform euxassay_002974_14
TS23: diencephalon Weak Uniform euxassay_002974_14
Specimen euxassay_002974_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_15
TS23: spinal cord Weak Uniform euxassay_002974_15
TS23: midbrain Weak Uniform euxassay_002974_15
TS23: hindbrain Weak Uniform euxassay_002974_15
TS23: diencephalon Weak Uniform euxassay_002974_15
Specimen euxassay_002974_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_16
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_16
TS23: spinal cord Weak Uniform euxassay_002974_16
TS23: midbrain Weak Uniform euxassay_002974_16
TS23: hindbrain Weak Uniform euxassay_002974_16
TS23: diencephalon Weak Uniform euxassay_002974_16
Specimen euxassay_002974_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_17
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_17
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_17
TS23: spinal cord Weak Uniform euxassay_002974_17
TS23: midbrain Weak Uniform euxassay_002974_17
TS23: hindbrain Weak Uniform euxassay_002974_17
TS23: diencephalon Weak Uniform euxassay_002974_17
Specimen euxassay_002974_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_18
TS23: midbrain Weak Uniform euxassay_002974_18
TS23: hindbrain Weak Uniform euxassay_002974_18
TS23: diencephalon Weak Uniform euxassay_002974_18
Specimen euxassay_002974_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_19
TS23: vagus ganglion Moderate Regionally restricted euxassay_002974_19
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002974_19
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_19
TS23: midbrain Weak Uniform euxassay_002974_19
TS23: hindbrain Weak Uniform euxassay_002974_19
TS23: diencephalon Weak Uniform euxassay_002974_19
Specimen euxassay_002974_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002974_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_20
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002974_20
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_20
TS23: hindbrain Weak Uniform euxassay_002974_20
TS23: midbrain Weak Uniform euxassay_002974_20
TS23: diencephalon Weak Uniform euxassay_002974_20
Specimen euxassay_002974_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_21
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002974_21
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_21
TS23: hindbrain Weak Uniform euxassay_002974_21
Specimen euxassay_002974_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_22
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_22
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_22
TS23: hindbrain Weak Uniform euxassay_002974_22
Specimen euxassay_002974_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_23
TS23: facial ganglion Moderate Regionally restricted euxassay_002974_23
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_23
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_23
Specimen euxassay_002974_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002974_24
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_002974_24
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_002974_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory