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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825320
Gene symbol: Hap1
Gene name: huntingtin-associated protein 1
Probe: T30236
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010402_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_02
Specimen euxassay_010402_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_03
TS23: hindbrain Moderate Regionally restricted euxassay_010402_03
TS23: stomach Weak Regionally restricted euxassay_010402_03
Specimen euxassay_010402_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Moderate Regionally restricted euxassay_010402_04
TS23: forebrain Moderate Regionally restricted euxassay_010402_04
TS23: stomach Weak Regionally restricted euxassay_010402_04
Specimen euxassay_010402_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Moderate Regionally restricted euxassay_010402_05
TS23: forebrain Moderate Regionally restricted euxassay_010402_05
TS23: stomach Weak Regionally restricted euxassay_010402_05
Specimen euxassay_010402_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_06
TS23: hindbrain Moderate Regionally restricted euxassay_010402_06
TS23: forebrain Moderate Regionally restricted euxassay_010402_06
TS23: vagus ganglion Weak Regionally restricted euxassay_010402_06
TS23: stomach Weak Regionally restricted euxassay_010402_06
TS23: upper jaw molar Weak Regionally restricted euxassay_010402_06
Specimen euxassay_010402_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Moderate Regionally restricted euxassay_010402_07
TS23: forebrain Moderate Regionally restricted euxassay_010402_07
TS23: midbrain Moderate Regionally restricted euxassay_010402_07
TS23: vagus ganglion Weak Regionally restricted euxassay_010402_07
TS23: stomach Weak Regionally restricted euxassay_010402_07
Specimen euxassay_010402_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_08
TS23: hindbrain Moderate Regionally restricted euxassay_010402_08
TS23: forebrain Moderate Regionally restricted euxassay_010402_08
TS23: spinal cord Moderate Regionally restricted euxassay_010402_08
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_08
TS23: cervical ganglion Moderate Regionally restricted euxassay_010402_08
TS23: stomach Weak Regionally restricted euxassay_010402_08
TS23: adrenal gland Moderate Regionally restricted euxassay_010402_08
Specimen euxassay_010402_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_09
TS23: hindbrain Moderate Regionally restricted euxassay_010402_09
TS23: forebrain Moderate Regionally restricted euxassay_010402_09
TS23: spinal cord Moderate Regionally restricted euxassay_010402_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_09
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_010402_09
TS23: trigeminal nerve Moderate Regionally restricted euxassay_010402_09
TS23: stomach Weak Regionally restricted euxassay_010402_09
TS23: midgut Weak Regionally restricted euxassay_010402_09
TS23: adrenal gland Moderate Regionally restricted euxassay_010402_09
Specimen euxassay_010402_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_10
TS23: hindbrain Moderate Regionally restricted euxassay_010402_10
TS23: forebrain Moderate Regionally restricted euxassay_010402_10
TS23: spinal cord Moderate Regionally restricted euxassay_010402_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_10
TS23: stomach Weak Regionally restricted euxassay_010402_10
TS23: midgut Weak Regionally restricted euxassay_010402_10
TS23: adrenal gland Moderate Regionally restricted euxassay_010402_10
TS23: pituitary gland Weak Regionally restricted euxassay_010402_10
TS23: thyroid gland Weak Regionally restricted euxassay_010402_10
TS23: lower jaw incisor Weak Regionally restricted euxassay_010402_10
Specimen euxassay_010402_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Moderate Regionally restricted euxassay_010402_11
TS23: midbrain Moderate Regionally restricted euxassay_010402_11
TS23: hindbrain Moderate Regionally restricted euxassay_010402_11
TS23: forebrain Moderate Regionally restricted euxassay_010402_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_11
TS23: thoracic ganglion Moderate Regionally restricted euxassay_010402_11
TS23: midgut Weak Regionally restricted euxassay_010402_11
TS23: pituitary gland Weak Regionally restricted euxassay_010402_11
TS23: lower jaw incisor Weak Regionally restricted euxassay_010402_11
TS23: upper jaw incisor Weak Regionally restricted euxassay_010402_11
Specimen euxassay_010402_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_12
TS23: hindbrain Moderate Regionally restricted euxassay_010402_12
TS23: forebrain Moderate Regionally restricted euxassay_010402_12
TS23: spinal cord Moderate Regionally restricted euxassay_010402_12
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_12
TS23: vomeronasal organ Weak Regionally restricted euxassay_010402_12
TS23: thoracic ganglion Moderate Regionally restricted euxassay_010402_12
TS23: midgut Weak Regionally restricted euxassay_010402_12
TS23: pituitary gland Weak Regionally restricted euxassay_010402_12
Specimen euxassay_010402_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Moderate Regionally restricted euxassay_010402_13
TS23: midbrain Moderate Regionally restricted euxassay_010402_13
TS23: hindbrain Moderate Regionally restricted euxassay_010402_13
TS23: forebrain Moderate Regionally restricted euxassay_010402_13
TS23: naris Weak Regionally restricted euxassay_010402_13
TS23: thoracic ganglion Moderate Regionally restricted euxassay_010402_13
TS23: midgut Weak Regionally restricted euxassay_010402_13
TS23: pituitary gland Weak Regionally restricted euxassay_010402_13
Specimen euxassay_010402_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Moderate Regionally restricted euxassay_010402_14
TS23: midbrain Moderate Regionally restricted euxassay_010402_14
TS23: hindbrain Moderate Regionally restricted euxassay_010402_14
TS23: forebrain Moderate Regionally restricted euxassay_010402_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_14
TS23: thoracic ganglion Moderate Regionally restricted euxassay_010402_14
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_010402_14
TS23: midgut Weak Regionally restricted euxassay_010402_14
TS23: pituitary gland Weak Regionally restricted euxassay_010402_14
TS23: thyroid gland Weak Regionally restricted euxassay_010402_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_010402_14
Specimen euxassay_010402_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Moderate Regionally restricted euxassay_010402_15
TS23: midbrain Moderate Regionally restricted euxassay_010402_15
TS23: hindbrain Moderate Regionally restricted euxassay_010402_15
TS23: forebrain Moderate Regionally restricted euxassay_010402_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_15
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_010402_15
TS23: midgut Weak Regionally restricted euxassay_010402_15
TS23: pituitary gland Weak Regionally restricted euxassay_010402_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_010402_15
TS23: upper jaw incisor Weak Regionally restricted euxassay_010402_15
Specimen euxassay_010402_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Moderate Regionally restricted euxassay_010402_16
TS23: midbrain Moderate Regionally restricted euxassay_010402_16
TS23: hindbrain Moderate Regionally restricted euxassay_010402_16
TS23: forebrain Moderate Regionally restricted euxassay_010402_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_16
TS23: cervical ganglion Moderate Regionally restricted euxassay_010402_16
TS23: trigeminal nerve Moderate Regionally restricted euxassay_010402_16
TS23: adrenal gland Moderate Regionally restricted euxassay_010402_16
TS23: upper jaw incisor Weak Regionally restricted euxassay_010402_16
TS23: lower jaw incisor Weak Regionally restricted euxassay_010402_16
Specimen euxassay_010402_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_17
TS23: hindbrain Moderate Regionally restricted euxassay_010402_17
TS23: forebrain Moderate Regionally restricted euxassay_010402_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_17
TS23: vagus ganglion Weak Regionally restricted euxassay_010402_17
TS23: adrenal gland Moderate Regionally restricted euxassay_010402_17
Specimen euxassay_010402_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Moderate Regionally restricted euxassay_010402_18
TS23: hindbrain Moderate Regionally restricted euxassay_010402_18
TS23: forebrain Moderate Regionally restricted euxassay_010402_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_18
Specimen euxassay_010402_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_19
TS23: hindbrain Moderate Regionally restricted euxassay_010402_19
TS23: midbrain Moderate Regionally restricted euxassay_010402_19
TS23: olfactory epithelium Weak Regionally restricted euxassay_010402_19
TS23: upper jaw molar Weak Regionally restricted euxassay_010402_19
TS23: lower jaw molar Weak Regionally restricted euxassay_010402_19
Specimen euxassay_010402_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Moderate Regionally restricted euxassay_010402_20
TS23: forebrain Moderate Regionally restricted euxassay_010402_20
Specimen euxassay_010402_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Moderate Regionally restricted euxassay_010402_21
TS23: forebrain Moderate Regionally restricted euxassay_010402_21
Specimen euxassay_010402_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_22
Specimen euxassay_010402_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_23
Specimen euxassay_010402_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Moderate Regionally restricted euxassay_010402_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory