About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825315
Gene symbol: Hacl1
Gene name: 2-hydroxyacyl-CoA lyase 1
Probe: IMAGE clone 2136055
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009209_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_01

Specimen euxassay_009209_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_02
TS23: renal calyx Moderate Regionally restricted euxassay_009209_02
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_02
TS23: choroid plexus Present euxassay_009209_02

Specimen euxassay_009209_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_03
TS23: renal calyx Moderate Regionally restricted euxassay_009209_03
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_03
TS23: choroid plexus Present euxassay_009209_03

Specimen euxassay_009209_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_04
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_04
TS23: renal calyx Moderate Regionally restricted euxassay_009209_04
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_04
TS23: choroid plexus Present euxassay_009209_04

Specimen euxassay_009209_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_05
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_05
TS23: pons ventricular layer Moderate Uniform euxassay_009209_05
TS23: renal calyx Moderate Regionally restricted euxassay_009209_05
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_05
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_05
TS23: choroid fissure Strong Regionally restricted euxassay_009209_05
TS23: choroid plexus Present euxassay_009209_05

Specimen euxassay_009209_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Uniform euxassay_009209_06
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_06
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_06
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_06
TS23: choroid plexus Present euxassay_009209_06
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_06
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_06

Specimen euxassay_009209_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_07
TS23: pons ventricular layer Moderate Uniform euxassay_009209_07
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_07
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_07
TS23: choroid plexus Present euxassay_009209_07
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_07
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_07

Specimen euxassay_009209_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_08
TS23: pons ventricular layer Moderate Uniform euxassay_009209_08
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_08
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_08
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_08
TS23: choroid plexus Present euxassay_009209_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_08
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_08

Specimen euxassay_009209_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Uniform euxassay_009209_09
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_09
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_09
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_09
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_09
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_09
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_09
TS23: choroid plexus Present euxassay_009209_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_09

Specimen euxassay_009209_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_10
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_10
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_10
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_10
TS23: pons ventricular layer Moderate Uniform euxassay_009209_10
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_10
TS23: renal calyx Moderate Regionally restricted euxassay_009209_10
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_10
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_10
TS23: choroid plexus Present euxassay_009209_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_10

Specimen euxassay_009209_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_11
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_11
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_11
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_11
TS23: pons ventricular layer Moderate Uniform euxassay_009209_11
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_11
TS23: renal calyx Moderate Regionally restricted euxassay_009209_11

Specimen euxassay_009209_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_12
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_12
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_12
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_12
TS23: pons ventricular layer Moderate Uniform euxassay_009209_12
TS23: renal calyx Moderate Regionally restricted euxassay_009209_12
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_12
TS23: choroid plexus Present euxassay_009209_12

Specimen euxassay_009209_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_13
TS23: pons ventricular layer Moderate Uniform euxassay_009209_13
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_13
TS23: choroid plexus Present euxassay_009209_13

Specimen euxassay_009209_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_14
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_14
TS23: choroid plexus Present euxassay_009209_14
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_14

Specimen euxassay_009209_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_15
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_15
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_15
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_15
TS23: choroid plexus Present euxassay_009209_15

Specimen euxassay_009209_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_16
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_16
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_16
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_16
TS23: choroid plexus Present euxassay_009209_16

Specimen euxassay_009209_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_17
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_17
TS23: choroid plexus Present euxassay_009209_17

Specimen euxassay_009209_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_18

Specimen euxassay_009209_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_19


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory