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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825315
Gene symbol: Hacl1
Gene name: 2-hydroxyacyl-CoA lyase 1
Probe: IMAGE clone 2136055
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009209_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_01
Specimen euxassay_009209_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_02
TS23: renal calyx Moderate Regionally restricted euxassay_009209_02
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_02
TS23: choroid plexus Present euxassay_009209_02
Specimen euxassay_009209_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_03
TS23: renal calyx Moderate Regionally restricted euxassay_009209_03
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_03
TS23: choroid plexus Present euxassay_009209_03
Specimen euxassay_009209_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_04
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_04
TS23: renal calyx Moderate Regionally restricted euxassay_009209_04
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_04
TS23: choroid plexus Present euxassay_009209_04
Specimen euxassay_009209_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_05
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_05
TS23: pons ventricular layer Moderate Uniform euxassay_009209_05
TS23: renal calyx Moderate Regionally restricted euxassay_009209_05
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_05
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_05
TS23: choroid fissure Strong Regionally restricted euxassay_009209_05
TS23: choroid plexus Present euxassay_009209_05
Specimen euxassay_009209_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Uniform euxassay_009209_06
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_06
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_06
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_06
TS23: choroid plexus Present euxassay_009209_06
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_06
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_06
Specimen euxassay_009209_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_07
TS23: pons ventricular layer Moderate Uniform euxassay_009209_07
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_07
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_07
TS23: choroid plexus Present euxassay_009209_07
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_07
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_07
Specimen euxassay_009209_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_08
TS23: pons ventricular layer Moderate Uniform euxassay_009209_08
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_08
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_08
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_08
TS23: choroid plexus Present euxassay_009209_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_08
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_009209_08
Specimen euxassay_009209_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Uniform euxassay_009209_09
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_09
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_09
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_09
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_09
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_09
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_09
TS23: choroid plexus Present euxassay_009209_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_09
Specimen euxassay_009209_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_10
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_10
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_10
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_10
TS23: pons ventricular layer Moderate Uniform euxassay_009209_10
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_10
TS23: renal calyx Moderate Regionally restricted euxassay_009209_10
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_10
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_10
TS23: choroid plexus Present euxassay_009209_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_009209_10
Specimen euxassay_009209_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_11
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_11
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_11
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_11
TS23: pons ventricular layer Moderate Uniform euxassay_009209_11
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_11
TS23: renal calyx Moderate Regionally restricted euxassay_009209_11
Specimen euxassay_009209_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Moderate Uniform euxassay_009209_12
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_009209_12
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_12
TS23: midbrain ventricular layer Moderate Uniform euxassay_009209_12
TS23: pons ventricular layer Moderate Uniform euxassay_009209_12
TS23: renal calyx Moderate Regionally restricted euxassay_009209_12
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_12
TS23: choroid plexus Present euxassay_009209_12
Specimen euxassay_009209_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_13
TS23: pons ventricular layer Moderate Uniform euxassay_009209_13
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_13
TS23: choroid plexus Present euxassay_009209_13
Specimen euxassay_009209_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_14
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_14
TS23: choroid plexus Present euxassay_009209_14
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_14
Specimen euxassay_009209_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_15
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_15
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_15
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_15
TS23: choroid plexus Present euxassay_009209_15
Specimen euxassay_009209_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_16
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_009209_16
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_009209_16
TS23: 4th ventricle Moderate Regionally restricted euxassay_009209_16
TS23: choroid plexus Present euxassay_009209_16
Specimen euxassay_009209_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_17
TS23: 4th ventricle Strong Regionally restricted euxassay_009209_17
TS23: choroid plexus Present euxassay_009209_17
Specimen euxassay_009209_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_18
Specimen euxassay_009209_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_009209_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory