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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823996
Gene symbol: Col9a2
Gene name: collagen, type IX, alpha 2
Probe: IMAGE clone 480602
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000512_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_01
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_01
TS23: otic capsule Moderate Regionally restricted euxassay_000512_01
TS23: cranium Strong Regionally restricted euxassay_000512_01
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_01
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_01
Specimen euxassay_000512_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_02
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_02
TS23: otic capsule Moderate Regionally restricted euxassay_000512_02
TS23: cranium Strong Regionally restricted euxassay_000512_02
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_02
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_02
Specimen euxassay_000512_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_03
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_03
TS23: otic capsule Moderate Regionally restricted euxassay_000512_03
TS23: cranium Strong Regionally restricted euxassay_000512_03
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_03
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_03
Specimen euxassay_000512_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_04
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_04
TS23: otic capsule Moderate Regionally restricted euxassay_000512_04
TS23: cranium Strong Regionally restricted euxassay_000512_04
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_04
Specimen euxassay_000512_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_05
TS23: cranium Strong Regionally restricted euxassay_000512_05
Specimen euxassay_000512_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_06
TS23: otic capsule Moderate Regionally restricted euxassay_000512_06
TS23: cranium Strong Regionally restricted euxassay_000512_06
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_000512_06
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_000512_06
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_06
Specimen euxassay_000512_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_07
TS23: otic capsule Moderate Regionally restricted euxassay_000512_07
TS23: cranium Strong Regionally restricted euxassay_000512_07
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_07
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_07
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_000512_07
Specimen euxassay_000512_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_08
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_08
TS23: rib Strong Regionally restricted euxassay_000512_08
TS23: otic capsule Moderate Regionally restricted euxassay_000512_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_08
TS23: cranium Strong Regionally restricted euxassay_000512_08
Specimen euxassay_000512_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_09
Specimen euxassay_000512_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_10
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_10
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_10
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_10
Specimen euxassay_000512_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_11
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_11
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_11
Specimen euxassay_000512_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_12
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_12
TS23: axial skeleton lumbar region Moderate Regionally restricted euxassay_000512_12
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_12
Specimen euxassay_000512_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_000512_13
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_13
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_13
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_000512_13
Specimen euxassay_000512_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton sacral region Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton lumbar region Moderate Regionally restricted euxassay_000512_14
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_14
Specimen euxassay_000512_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton tail region Strong Regionally restricted euxassay_000512_15
TS23: otic capsule Moderate Regionally restricted euxassay_000512_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_15
Specimen euxassay_000512_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton tail region Strong Regionally restricted euxassay_000512_16
TS23: otic capsule Moderate Regionally restricted euxassay_000512_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_16
Specimen euxassay_000512_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_17
Specimen euxassay_000512_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Moderate Regionally restricted euxassay_000512_18
TS23: otic capsule Moderate Regionally restricted euxassay_000512_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_18
Specimen euxassay_000512_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_19
TS23: otic capsule Moderate Regionally restricted euxassay_000512_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_19
TS23: cranium Strong Regionally restricted euxassay_000512_19
Specimen euxassay_000512_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_20
TS23: otic capsule Moderate Regionally restricted euxassay_000512_20
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_20
TS23: cranium Strong Regionally restricted euxassay_000512_20
Specimen euxassay_000512_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_21
TS23: otic capsule Moderate Regionally restricted euxassay_000512_21
TS23: cranium Strong Regionally restricted euxassay_000512_21
Specimen euxassay_000512_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_22
TS23: otic capsule Moderate Regionally restricted euxassay_000512_22
TS23: cranium Strong Regionally restricted euxassay_000512_22
Specimen euxassay_000512_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_23
TS23: otic capsule Moderate Regionally restricted euxassay_000512_23
TS23: cranium Strong Regionally restricted euxassay_000512_23
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_23
Specimen euxassay_000512_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_24
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_24
TS23: otic capsule Moderate Regionally restricted euxassay_000512_24
TS23: cranium Strong Regionally restricted euxassay_000512_24
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory