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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823676
Gene symbol: Ccdc40
Gene name: coiled-coil domain containing 40
Probe: MGC clone 109697
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005957_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_01
Specimen euxassay_005957_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_02
Specimen euxassay_005957_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_03
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_005957_03
Specimen euxassay_005957_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005957_04
Specimen euxassay_005957_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_05
Specimen euxassay_005957_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_005957_06
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_06
Specimen euxassay_005957_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: choroid invagination Strong Regionally restricted euxassay_005957_07
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_005957_07
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_07
Specimen euxassay_005957_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: choroid invagination Strong Regionally restricted euxassay_005957_08
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_005957_08
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_08
Specimen euxassay_005957_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_09
TS23: choroid invagination Strong Regionally restricted euxassay_005957_09
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_005957_09
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_09
Specimen euxassay_005957_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_10
TS23: choroid invagination Strong Regionally restricted euxassay_005957_10
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_005957_10
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_10
Specimen euxassay_005957_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_11
TS23: choroid invagination Strong Regionally restricted euxassay_005957_11
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_005957_11
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_11
Specimen euxassay_005957_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: choroid invagination Strong Regionally restricted euxassay_005957_12
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_005957_12
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_12
Specimen euxassay_005957_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_13
TS23: choroid invagination Strong Regionally restricted euxassay_005957_13
TS23: diencephalon roof plate Strong Regionally restricted euxassay_005957_13
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_13
Specimen euxassay_005957_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon roof plate Strong Regionally restricted euxassay_005957_14
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_14
Specimen euxassay_005957_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_15
TS23: diencephalon roof plate Strong Regionally restricted euxassay_005957_15
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_15
Specimen euxassay_005957_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_16
TS23: choroid invagination Strong Regionally restricted euxassay_005957_16
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_005957_16
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_16
Specimen euxassay_005957_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_17
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_005957_17
TS23: choroid invagination Strong Regionally restricted euxassay_005957_17
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_17
Specimen euxassay_005957_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005957_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_005957_18
TS23: choroid invagination Strong Regionally restricted euxassay_005957_18
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_18
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_005957_18
Specimen euxassay_005957_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_005957_19
TS23: choroid invagination Strong Regionally restricted euxassay_005957_19
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005957_19
Specimen euxassay_005957_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: choroid invagination Strong Regionally restricted euxassay_005957_20
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_20
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005957_20
Specimen euxassay_005957_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_005957_21
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005957_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory