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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823594
Gene symbol: Calb1
Gene name: calbindin 1
Probe: MGC clone 25386
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 6C - Calb1: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay.
Structure Level Pattern Image Note
TS23: thalamus mantle layer Present Regionally restricted 6C composite Expression is present in the ventral pole.
Specimen euxassay_007049_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_01
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_01
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_01
TS23: stomach Strong Single cells euxassay_007049_01
Specimen euxassay_007049_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_02
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_02
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_02
TS23: stomach Strong Single cells euxassay_007049_02
Specimen euxassay_007049_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_03
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_03
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_03
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_03
TS23: stomach Strong Single cells euxassay_007049_03
Specimen euxassay_007049_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_04
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_04
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_04
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_04
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_04
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_04
TS23: pons mantle layer Strong Spotted euxassay_007049_04
TS23: stomach Strong Single cells euxassay_007049_04
TS23: left lung Strong Regionally restricted euxassay_007049_04
Specimen euxassay_007049_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_05
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_05
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_05
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_05
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_05
TS23: pons mantle layer Strong Spotted euxassay_007049_05
TS23: stomach Strong Single cells euxassay_007049_05
TS23: left lung Strong Regionally restricted euxassay_007049_05
Specimen euxassay_007049_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_06
TS23: inner ear Strong Regionally restricted euxassay_007049_06
TS23: trigeminal ganglion Strong Spotted euxassay_007049_06
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_06
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_06
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_06
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_06
TS23: pons mantle layer Strong Spotted euxassay_007049_06
TS23: stomach Strong Single cells euxassay_007049_06
TS23: left lung Moderate Regionally restricted euxassay_007049_06
Specimen euxassay_007049_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_07
TS23: inner ear Strong Regionally restricted euxassay_007049_07
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_07
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_07
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_07
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_07
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_07
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_07
TS23: pons mantle layer Strong Spotted euxassay_007049_07
TS23: stomach Strong Single cells euxassay_007049_07
TS23: left lung Moderate Regionally restricted euxassay_007049_07
Specimen euxassay_007049_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_08
TS23: inner ear Strong Regionally restricted euxassay_007049_08
TS23: metanephros Strong Regionally restricted euxassay_007049_08 There was strong expression in the excretory component.
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_08
TS23: vagus ganglion Moderate Spotted euxassay_007049_08
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_08
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_08
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_08
TS23: midbrain mantle layer Strong Spotted euxassay_007049_08
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_08
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_08
TS23: pons mantle layer Strong Spotted euxassay_007049_08
TS23: dorsal root ganglion Strong Spotted euxassay_007049_08
TS23: midgut Strong Single cells euxassay_007049_08
TS23: stomach Strong Single cells euxassay_007049_08
TS23: left lung Strong Regionally restricted euxassay_007049_08
Specimen euxassay_007049_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_09
TS23: inner ear Strong Regionally restricted euxassay_007049_09
TS23: renal cortex Strong Regionally restricted euxassay_007049_09
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_09
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_09
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_09
TS23: midbrain marginal layer Strong Spotted euxassay_007049_09
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_09
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_09
TS23: pons mantle layer Strong Spotted euxassay_007049_09
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_09
TS23: dorsal root ganglion Strong Spotted euxassay_007049_09
TS23: stomach Strong Single cells euxassay_007049_09
TS23: midgut Strong Single cells euxassay_007049_09
TS23: left lung Moderate Regionally restricted euxassay_007049_09
Specimen euxassay_007049_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_10
TS23: renal cortex Strong Regionally restricted euxassay_007049_10
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_007049_10
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_10
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_10
TS23: midbrain mantle layer Strong Spotted euxassay_007049_10
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_10
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_10
TS23: pons mantle layer Strong Spotted euxassay_007049_10
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_10
TS23: dorsal root ganglion Strong Spotted euxassay_007049_10
TS23: stomach Strong Single cells euxassay_007049_10
TS23: midgut Strong Single cells euxassay_007049_10
TS23: left lung Moderate Regionally restricted euxassay_007049_10
Specimen euxassay_007049_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_11
TS23: renal cortex Strong Regionally restricted euxassay_007049_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_11
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_11
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_11
TS23: midbrain mantle layer Strong Spotted euxassay_007049_11
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_11
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_11
TS23: pons mantle layer Strong Spotted euxassay_007049_11
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_11
TS23: dorsal root ganglion Strong Spotted euxassay_007049_11
TS23: stomach Strong Single cells euxassay_007049_11
TS23: midgut Strong Single cells euxassay_007049_11
TS23: left lung Moderate Regionally restricted euxassay_007049_11
Specimen euxassay_007049_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_12
TS23: renal cortex Strong Regionally restricted euxassay_007049_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_12
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_12
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_12
TS23: midbrain mantle layer Strong Spotted euxassay_007049_12
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_12
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_12
TS23: pons mantle layer Strong Spotted euxassay_007049_12
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_12
TS23: dorsal root ganglion Strong Spotted euxassay_007049_12
TS23: midgut Strong Single cells euxassay_007049_12
TS23: left lung Moderate Regionally restricted euxassay_007049_12
Specimen euxassay_007049_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_007049_13
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_13
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_13
TS23: midbrain mantle layer Strong Spotted euxassay_007049_13
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_13
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_13
TS23: pons mantle layer Strong Spotted euxassay_007049_13
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_13
TS23: dorsal root ganglion Strong Spotted euxassay_007049_13
TS23: midgut Strong Single cells euxassay_007049_13
TS23: left lung Moderate Regionally restricted euxassay_007049_13
Specimen euxassay_007049_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_14
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_14
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_14
TS23: midbrain mantle layer Strong Spotted euxassay_007049_14
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_14
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_14
TS23: pons mantle layer Strong Spotted euxassay_007049_14
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_14
TS23: dorsal root ganglion Strong Spotted euxassay_007049_14
TS23: midgut Strong Single cells euxassay_007049_14
TS23: left lung Moderate Regionally restricted euxassay_007049_14
Specimen euxassay_007049_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_15
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_15
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_15
TS23: midbrain mantle layer Strong Spotted euxassay_007049_15
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_15
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_15
TS23: pons mantle layer Strong Spotted euxassay_007049_15
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_15
TS23: dorsal root ganglion Strong Spotted euxassay_007049_15
TS23: midgut Strong Single cells euxassay_007049_15
TS23: left lung Moderate Regionally restricted euxassay_007049_15
Specimen euxassay_007049_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_16
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_16
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_16
TS23: midbrain mantle layer Strong Spotted euxassay_007049_16
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_16
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_16
TS23: pons mantle layer Strong Spotted euxassay_007049_16
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_16
TS23: midgut Strong Single cells euxassay_007049_16
TS23: right lung Moderate Regionally restricted euxassay_007049_16
Specimen euxassay_007049_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_17
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_17
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_17
TS23: midbrain mantle layer Strong Spotted euxassay_007049_17
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_17
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_17
TS23: pons mantle layer Strong Spotted euxassay_007049_17
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_17
TS23: dorsal root ganglion Strong Spotted euxassay_007049_17
TS23: midgut Strong Single cells euxassay_007049_17
TS23: right lung Moderate Regionally restricted euxassay_007049_17
Specimen euxassay_007049_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_18
TS23: inner ear Strong Regionally restricted euxassay_007049_18
TS23: renal cortex Strong Regionally restricted euxassay_007049_18
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_18
TS23: vagus ganglion Moderate Spotted euxassay_007049_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_18
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_18
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_18
TS23: midbrain mantle layer Strong Spotted euxassay_007049_18
TS23: pons mantle layer Strong Spotted euxassay_007049_18
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_18
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_18
TS23: spinal cord mantle layer Strong Spotted euxassay_007049_18
TS23: dorsal root ganglion Strong Spotted euxassay_007049_18
TS23: midgut Strong Single cells euxassay_007049_18
TS23: right lung Moderate Regionally restricted euxassay_007049_18
Specimen euxassay_007049_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_19
TS23: inner ear Strong Regionally restricted euxassay_007049_19
TS23: renal cortex Strong Regionally restricted euxassay_007049_19
TS23: vagus ganglion Moderate Spotted euxassay_007049_19
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_19
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_007049_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_19
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_19
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_19
TS23: midbrain mantle layer Strong Spotted euxassay_007049_19
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_19
TS23: pons mantle layer Strong Spotted euxassay_007049_19
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_007049_19
TS23: dorsal root ganglion Strong Spotted euxassay_007049_19
TS23: midgut Strong Single cells euxassay_007049_19
TS23: right lung Moderate Regionally restricted euxassay_007049_19
Specimen euxassay_007049_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_20
TS23: inner ear Strong Regionally restricted euxassay_007049_20
TS23: renal cortex Strong Regionally restricted euxassay_007049_20
TS23: trigeminal ganglion Moderate Spotted euxassay_007049_20
TS23: olfactory epithelium Strong Regionally restricted euxassay_007049_20
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_007049_20
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_20
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_20
TS23: pons mantle layer Strong Spotted euxassay_007049_20
TS23: midgut Strong Single cells euxassay_007049_20
TS23: right lung Moderate Regionally restricted euxassay_007049_20
Specimen euxassay_007049_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_21
TS23: renal cortex Strong Regionally restricted euxassay_007049_21
TS23: trigeminal ganglion Strong Spotted euxassay_007049_21
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_21
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007049_21
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_21
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_21
TS23: pons mantle layer Strong Spotted euxassay_007049_21
TS23: midgut Strong Single cells euxassay_007049_21
TS23: right lung Moderate Regionally restricted euxassay_007049_21
Specimen euxassay_007049_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_22
TS23: renal cortex Strong Regionally restricted euxassay_007049_22
TS23: trigeminal ganglion Strong Spotted euxassay_007049_22
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_22
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_22
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_007049_22
TS23: midgut Strong Single cells euxassay_007049_22
TS23: right lung Moderate Regionally restricted euxassay_007049_22
Specimen euxassay_007049_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_23
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_23
TS23: trigeminal ganglion Strong Spotted euxassay_007049_23
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_23
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_23
TS23: right lung Moderate Regionally restricted euxassay_007049_23
Specimen euxassay_007049_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: skin Strong Regionally restricted euxassay_007049_24
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_007049_24
TS23: perioptic mesenchyme Moderate Regionally restricted euxassay_007049_24
TS23: telencephalon mantle layer Strong Spotted euxassay_007049_24
TS23: right lung Moderate Regionally restricted euxassay_007049_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory