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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823301
Gene symbol: Atp11a
Gene name: ATPase, class VI, type 11A
Probe: T50128
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018926_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_01
Specimen euxassay_018926_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_02
Specimen euxassay_018926_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_03
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_03
Specimen euxassay_018926_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_04
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_04
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_04
Specimen euxassay_018926_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_05
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_05
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_05
Specimen euxassay_018926_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_06
TS23: midgut Moderate Regionally restricted euxassay_018926_06
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_06
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_06
Specimen euxassay_018926_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_07
TS23: olfactory epithelium Moderate Regionally restricted euxassay_018926_07
TS23: midgut Moderate Regionally restricted euxassay_018926_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_07
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_07
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_07
Specimen euxassay_018926_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_08
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_018926_08
TS23: midgut Strong Regionally restricted euxassay_018926_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_08
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_08
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_08
Specimen euxassay_018926_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_09
TS23: midgut Strong Regionally restricted euxassay_018926_09
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_09
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_09
Specimen euxassay_018926_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_10
TS23: midgut Strong Regionally restricted euxassay_018926_10
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_10
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_10
Specimen euxassay_018926_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_11
TS23: midgut Strong Regionally restricted euxassay_018926_11
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_11
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_11
Specimen euxassay_018926_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_12
TS23: midgut Strong Regionally restricted euxassay_018926_12
TS23: thyroid gland Strong Regionally restricted euxassay_018926_12
TS23: bladder Moderate Regionally restricted euxassay_018926_12
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_12
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_12
Specimen euxassay_018926_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_018926_13
TS23: bladder Moderate Regionally restricted euxassay_018926_13
TS23: urethra Weak Regionally restricted euxassay_018926_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_13
Specimen euxassay_018926_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_018926_14
TS23: bladder Moderate Regionally restricted euxassay_018926_14
TS23: urethra Weak Regionally restricted euxassay_018926_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_14
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_14
Specimen euxassay_018926_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_15
TS23: midgut Strong Regionally restricted euxassay_018926_15
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_15
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_15
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_15
Specimen euxassay_018926_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_16
TS23: midgut Strong Regionally restricted euxassay_018926_16
TS23: thyroid gland Moderate Regionally restricted euxassay_018926_16
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_16
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_16
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_16
Specimen euxassay_018926_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_17
TS23: midgut Strong Regionally restricted euxassay_018926_17
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_17
Specimen euxassay_018926_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_18
TS23: midgut Strong Regionally restricted euxassay_018926_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_18
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_18
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_18
Specimen euxassay_018926_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_19
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_19
TS23: midgut Strong Regionally restricted euxassay_018926_19
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_19
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_19
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory