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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822847
Gene symbol: Ndnf
Gene name: neuron-derived neurotrophic factor
Probe: MGC clone 54980
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004095_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_01
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004095_01
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_01
Specimen euxassay_004095_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_02
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_02
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004095_02
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_02
Specimen euxassay_004095_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_03
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_03
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_03
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004095_03
Specimen euxassay_004095_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_04
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_04
TS23: vibrissa Moderate Regionally restricted euxassay_004095_04
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004095_04
Specimen euxassay_004095_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_05
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_05
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_05
TS23: vibrissa Moderate Regionally restricted euxassay_004095_05
Specimen euxassay_004095_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_06
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_06
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_06
TS23: lower jaw molar Moderate Regionally restricted euxassay_004095_06
TS23: vibrissa Moderate Regionally restricted euxassay_004095_06
TS23: pons ventricular layer Weak Regionally restricted euxassay_004095_06
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_06
Specimen euxassay_004095_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_07
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_004095_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_004095_07
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_07
Specimen euxassay_004095_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_004095_08
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_08
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_08
Specimen euxassay_004095_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_09
TS23: cervical intervertebral disc Strong Regionally restricted euxassay_004095_09
TS23: lumbar intervertebral disc Strong Regionally restricted euxassay_004095_09
TS23: thoracic intervertebral disc Strong Regionally restricted euxassay_004095_09
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_004095_09
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_09
Specimen euxassay_004095_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_10
TS23: cervical intervertebral disc Strong Regionally restricted euxassay_004095_10
TS23: lumbar intervertebral disc Strong Regionally restricted euxassay_004095_10
TS23: thoracic intervertebral disc Strong Regionally restricted euxassay_004095_10
TS23: sacral vertebral cartilage condensation Strong Regionally restricted euxassay_004095_10
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_10
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_004095_10
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_10
Specimen euxassay_004095_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: left lung Strong Regionally restricted euxassay_004095_11
TS23: thoracic intervertebral disc Strong Regionally restricted euxassay_004095_11
TS23: sacral vertebral cartilage condensation Strong Regionally restricted euxassay_004095_11
TS23: lumbar intervertebral disc Strong Regionally restricted euxassay_004095_11
TS23: cervical intervertebral disc Strong Regionally restricted euxassay_004095_11
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_004095_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_004095_11
Specimen euxassay_004095_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_12
TS23: tail mesenchyme Moderate Regionally restricted euxassay_004095_12
TS23: cervical intervertebral disc Strong Regionally restricted euxassay_004095_12
TS23: lumbar intervertebral disc Strong Regionally restricted euxassay_004095_12
TS23: sacral vertebral cartilage condensation Strong Regionally restricted euxassay_004095_12
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_004095_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_004095_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_004095_12
Specimen euxassay_004095_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_13
TS23: tail mesenchyme Moderate Regionally restricted euxassay_004095_13
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_004095_13
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_13
TS23: medulla oblongata basal plate marginal layer Strong Single cells euxassay_004095_13
TS23: medulla oblongata basal plate ventricular layer Strong Single cells euxassay_004095_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_004095_13
Specimen euxassay_004095_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_14
TS23: tail mesenchyme Moderate Regionally restricted euxassay_004095_14
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_14
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_004095_14
TS23: tongue epithelium Strong Regionally restricted euxassay_004095_14
TS23: medulla oblongata basal plate marginal layer Strong Single cells euxassay_004095_14
TS23: medulla oblongata basal plate ventricular layer Strong Single cells euxassay_004095_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_004095_14
Specimen euxassay_004095_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_15
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_004095_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_004095_15
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_15
Specimen euxassay_004095_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_16
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_004095_16
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_16
TS23: pons ventricular layer Strong Single cells euxassay_004095_16
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_16
Specimen euxassay_004095_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_17
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_004095_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_004095_17
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_17
Specimen euxassay_004095_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_18
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_004095_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_004095_18
TS23: pons ventricular layer Weak Regionally restricted euxassay_004095_18
TS23: thalamus mantle layer Weak Regionally restricted euxassay_004095_18
Specimen euxassay_004095_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_19
TS23: body wall mesenchyme Moderate Regionally restricted euxassay_004095_19
TS23: vibrissa Moderate Regionally restricted euxassay_004095_19
Specimen euxassay_004095_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_004095_20
TS23: vibrissa Weak Regionally restricted euxassay_004095_20
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004095_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory