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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822610
Gene symbol: Smdt1
Gene name: single-pass membrane protein with aspartate rich tail 1
Probe: MGC clone 41569
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006832_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_006832_01
Specimen euxassay_006832_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_006832_02
Specimen euxassay_006832_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_006832_03
Specimen euxassay_006832_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_04
TS23: neural retina Moderate Regionally restricted euxassay_006832_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006832_04
Specimen euxassay_006832_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_05
TS23: facial ganglion Moderate Regionally restricted euxassay_006832_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006832_05
Specimen euxassay_006832_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_06
TS23: facial ganglion Moderate Regionally restricted euxassay_006832_06
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006832_06
Specimen euxassay_006832_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006832_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_006832_07
TS23: orbito-sphenoid Weak Regionally restricted euxassay_006832_07
TS23: vibrissa Moderate Regionally restricted euxassay_006832_07
Specimen euxassay_006832_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006832_08
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_006832_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006832_08 trigeminal motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006832_08
TS23: vibrissa Moderate Regionally restricted euxassay_006832_08
Specimen euxassay_006832_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_006832_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006832_09 facial motor nucleus
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006832_09
TS23: vibrissa Moderate Regionally restricted euxassay_006832_09
Specimen euxassay_006832_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_006832_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_10
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006832_10
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_10
Specimen euxassay_006832_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_11
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_11
Specimen euxassay_006832_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_006832_12
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_12
Specimen euxassay_006832_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_006832_13
Specimen euxassay_006832_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_14
Specimen euxassay_006832_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_15
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_15
Specimen euxassay_006832_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006832_16 facial motor nucleus
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_16
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006832_16
TS23: ventral grey horn Weak Regionally restricted euxassay_006832_16
Specimen euxassay_006832_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006832_17 facial motor nucleus
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_17
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006832_17
TS23: cervical ganglion Moderate Regionally restricted euxassay_006832_17
Specimen euxassay_006832_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_006832_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006832_18
TS23: vagus ganglion Moderate Regionally restricted euxassay_006832_18
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_006832_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006832_18 trigeminal motor nucleus
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006832_18
Specimen euxassay_006832_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006832_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_19
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_006832_19
Specimen euxassay_006832_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_006832_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_20
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006832_20
Specimen euxassay_006832_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_21
TS23: facial ganglion Moderate Regionally restricted euxassay_006832_21
TS23: vibrissa Moderate Regionally restricted euxassay_006832_21
Specimen euxassay_006832_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_22
TS23: facial ganglion Moderate Regionally restricted euxassay_006832_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006832_22
TS23: vibrissa Moderate Regionally restricted euxassay_006832_22
Specimen euxassay_006832_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006832_23
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006832_23
TS23: vibrissa Weak Regionally restricted euxassay_006832_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory