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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822591
Gene symbol: Mtcl1
Gene name: microtubule crosslinking factor 1
Probe: MGC clone 77963
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_013715_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_01
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_01
TS23: forearm rest of mesenchyme Strong Regionally restricted euxassay_013715_01
TS23: hand Strong Regionally restricted euxassay_013715_01
TS23: foot Strong Regionally restricted euxassay_013715_01
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_01
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_013715_01
TS23: diaphragm Strong Regionally restricted euxassay_013715_01
TS23: brain Strong Regionally restricted euxassay_013715_01
Specimen euxassay_013715_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_02
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_02
TS23: forearm rest of mesenchyme Strong Regionally restricted euxassay_013715_02
TS23: hand Strong Regionally restricted euxassay_013715_02
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_013715_02
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_02
TS23: foot Strong Regionally restricted euxassay_013715_02
TS23: diaphragm Strong Regionally restricted euxassay_013715_02
TS23: stomach Strong Regionally restricted euxassay_013715_02
TS23: retina Strong Regionally restricted euxassay_013715_02
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_02
TS23: brain Strong Regionally restricted euxassay_013715_02
Specimen euxassay_013715_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_03
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_03
TS23: foot Strong Regionally restricted euxassay_013715_03
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_013715_03
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_03
TS23: diaphragm Strong Regionally restricted euxassay_013715_03
TS23: stomach Strong Regionally restricted euxassay_013715_03
TS23: retina Strong Regionally restricted euxassay_013715_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_03
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_03
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_03
TS23: brain Strong Regionally restricted euxassay_013715_03
Specimen euxassay_013715_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_04
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_04
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_04
TS23: left lung Strong Regionally restricted euxassay_013715_04
TS23: diaphragm Strong Regionally restricted euxassay_013715_04
TS23: stomach Strong Regionally restricted euxassay_013715_04
TS23: retina Strong Regionally restricted euxassay_013715_04
TS23: cornea epithelium Strong Regionally restricted euxassay_013715_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_04
TS23: facial ganglion Strong Regionally restricted euxassay_013715_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_04
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_04
TS23: brain Strong Regionally restricted euxassay_013715_04
Specimen euxassay_013715_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_05
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_05
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_05
TS23: left lung Strong Regionally restricted euxassay_013715_05
TS23: diaphragm Strong Regionally restricted euxassay_013715_05
TS23: stomach Strong Regionally restricted euxassay_013715_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_05
TS23: facial ganglion Strong Regionally restricted euxassay_013715_05
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_05
TS23: brain Strong Regionally restricted euxassay_013715_05
Specimen euxassay_013715_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_06
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_06
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_06
TS23: left lung Strong Regionally restricted euxassay_013715_06
TS23: diaphragm Strong Regionally restricted euxassay_013715_06
TS23: stomach Strong Regionally restricted euxassay_013715_06
TS23: vibrissa Strong Regionally restricted euxassay_013715_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013715_06
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_06
TS23: brain Strong Regionally restricted euxassay_013715_06
Specimen euxassay_013715_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_07
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_07
TS23: left lung Strong Regionally restricted euxassay_013715_07
TS23: diaphragm Strong Regionally restricted euxassay_013715_07
TS23: stomach Strong Regionally restricted euxassay_013715_07
TS23: vibrissa Strong Regionally restricted euxassay_013715_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_07
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013715_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_07
TS23: facial ganglion Strong Regionally restricted euxassay_013715_07
TS23: upper jaw molar Strong Regionally restricted euxassay_013715_07
TS23: lower jaw molar Strong Regionally restricted euxassay_013715_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_07
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_07
TS23: brain Strong Regionally restricted euxassay_013715_07
Specimen euxassay_013715_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_08
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_08
TS23: left lung Strong Regionally restricted euxassay_013715_08
TS23: diaphragm Strong Regionally restricted euxassay_013715_08
TS23: stomach Strong Regionally restricted euxassay_013715_08
TS23: renal calyx Strong Regionally restricted euxassay_013715_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_08
TS23: vibrissa Strong Regionally restricted euxassay_013715_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_08
TS23: vagus ganglion Strong Regionally restricted euxassay_013715_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_08
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_08
TS23: brain Strong Regionally restricted euxassay_013715_08
TS23: spinal cord Strong Regionally restricted euxassay_013715_08
Specimen euxassay_013715_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_09
TS23: left lung Strong Regionally restricted euxassay_013715_09
TS23: stomach Strong Regionally restricted euxassay_013715_09
TS23: midgut Strong Regionally restricted euxassay_013715_09
TS23: renal calyx Strong Regionally restricted euxassay_013715_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_09
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_09
TS23: brain Strong Regionally restricted euxassay_013715_09
TS23: spinal cord Strong Regionally restricted euxassay_013715_09
Specimen euxassay_013715_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_10
TS23: left lung Strong Regionally restricted euxassay_013715_10
TS23: stomach Strong Regionally restricted euxassay_013715_10
TS23: midgut Strong Regionally restricted euxassay_013715_10
TS23: renal calyx Strong Regionally restricted euxassay_013715_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_10
TS23: tail mesenchyme Strong Regionally restricted euxassay_013715_10
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_10
TS23: brain Strong Regionally restricted euxassay_013715_10
TS23: spinal cord Strong Regionally restricted euxassay_013715_10
Specimen euxassay_013715_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_11
TS23: left lung Strong Regionally restricted euxassay_013715_11
TS23: stomach Strong Regionally restricted euxassay_013715_11
TS23: midgut Strong Regionally restricted euxassay_013715_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_11
TS23: tail mesenchyme Strong Regionally restricted euxassay_013715_11
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_11
TS23: brain Strong Regionally restricted euxassay_013715_11
TS23: spinal cord Strong Regionally restricted euxassay_013715_11
Specimen euxassay_013715_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_12
TS23: left lung Strong Regionally restricted euxassay_013715_12
TS23: midgut Strong Regionally restricted euxassay_013715_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_12
TS23: vomeronasal organ Strong Regionally restricted euxassay_013715_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_013715_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_013715_12
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_12
TS23: tail mesenchyme Strong Regionally restricted euxassay_013715_12
TS23: brain Strong Regionally restricted euxassay_013715_12
TS23: spinal cord Strong Regionally restricted euxassay_013715_12
Specimen euxassay_013715_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_13
TS23: left lung Strong Regionally restricted euxassay_013715_13
TS23: midgut Strong Regionally restricted euxassay_013715_13
TS23: rectum Strong Regionally restricted euxassay_013715_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_13
TS23: vomeronasal organ Strong Regionally restricted euxassay_013715_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_013715_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_013715_13
TS23: axial skeleton tail region Strong Regionally restricted euxassay_013715_13
TS23: tail mesenchyme Strong Regionally restricted euxassay_013715_13
TS23: brain Strong Regionally restricted euxassay_013715_13
TS23: spinal cord Strong Regionally restricted euxassay_013715_13
Specimen euxassay_013715_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_14
TS23: left lung Strong Regionally restricted euxassay_013715_14
TS23: right lung Strong Regionally restricted euxassay_013715_14
TS23: midgut Strong Regionally restricted euxassay_013715_14
TS23: brain Strong Regionally restricted euxassay_013715_14
TS23: spinal cord Strong Regionally restricted euxassay_013715_14
Specimen euxassay_013715_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_15
TS23: right lung Strong Regionally restricted euxassay_013715_15
TS23: midgut Strong Regionally restricted euxassay_013715_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_15
TS23: vomeronasal organ Strong Regionally restricted euxassay_013715_15
TS23: brain Strong Regionally restricted euxassay_013715_15
TS23: spinal cord Strong Regionally restricted euxassay_013715_15
Specimen euxassay_013715_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_16
TS23: right lung Strong Regionally restricted euxassay_013715_16
TS23: midgut Strong Regionally restricted euxassay_013715_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_16
TS23: vomeronasal organ Strong Regionally restricted euxassay_013715_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_16
TS23: brain Strong Regionally restricted euxassay_013715_16
TS23: spinal cord Strong Regionally restricted euxassay_013715_16
Specimen euxassay_013715_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_17
TS23: right lung Strong Regionally restricted euxassay_013715_17
TS23: midgut Strong Regionally restricted euxassay_013715_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_17
TS23: anterior naris epithelium Strong Regionally restricted euxassay_013715_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_17
TS23: lower jaw incisor Moderate Regionally restricted euxassay_013715_17
TS23: upper jaw incisor Moderate Regionally restricted euxassay_013715_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_17
TS23: brain Strong Regionally restricted euxassay_013715_17
TS23: spinal cord Strong Regionally restricted euxassay_013715_17
Specimen euxassay_013715_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_18
TS23: right lung Strong Regionally restricted euxassay_013715_18
TS23: midgut Strong Regionally restricted euxassay_013715_18
TS23: renal calyx Strong Regionally restricted euxassay_013715_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_18
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013715_18
TS23: vagus ganglion Strong Regionally restricted euxassay_013715_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_18
TS23: brain Strong Regionally restricted euxassay_013715_18
Specimen euxassay_013715_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_19
TS23: upper leg muscle Moderate Regionally restricted euxassay_013715_19
TS23: right lung Strong Regionally restricted euxassay_013715_19
TS23: midgut Strong Regionally restricted euxassay_013715_19
TS23: renal calyx Strong Regionally restricted euxassay_013715_19
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_19
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013715_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_19
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013715_19
TS23: brain Strong Regionally restricted euxassay_013715_19
Specimen euxassay_013715_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_20
TS23: upper leg muscle Moderate Regionally restricted euxassay_013715_20
TS23: foot Moderate Regionally restricted euxassay_013715_20
TS23: right lung Strong Regionally restricted euxassay_013715_20
TS23: diaphragm Strong Regionally restricted euxassay_013715_20
TS23: midgut Strong Regionally restricted euxassay_013715_20
TS23: renal calyx Strong Regionally restricted euxassay_013715_20
TS23: olfactory epithelium Strong Regionally restricted euxassay_013715_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_20
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_20
TS23: facial ganglion Strong Regionally restricted euxassay_013715_20
TS23: lower jaw molar Strong Regionally restricted euxassay_013715_20
TS23: upper jaw molar Strong Regionally restricted euxassay_013715_20
TS23: brain Strong Regionally restricted euxassay_013715_20
Specimen euxassay_013715_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_21
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_21
TS23: foot Strong Regionally restricted euxassay_013715_21
TS23: upper leg muscle Strong Regionally restricted euxassay_013715_21
TS23: right lung Strong Regionally restricted euxassay_013715_21
TS23: diaphragm Strong Regionally restricted euxassay_013715_21
TS23: renal calyx Strong Regionally restricted euxassay_013715_21
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_21
TS23: facial ganglion Strong Regionally restricted euxassay_013715_21
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013715_21
TS23: brain Strong Regionally restricted euxassay_013715_21
Specimen euxassay_013715_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_22
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_22
TS23: foot Strong Regionally restricted euxassay_013715_22
TS23: lower leg rest of mesenchyme Moderate Regionally restricted euxassay_013715_22
TS23: upper leg muscle Moderate Regionally restricted euxassay_013715_22
TS23: right lung Strong Regionally restricted euxassay_013715_22
TS23: diaphragm Strong Regionally restricted euxassay_013715_22
TS23: vibrissa Strong Regionally restricted euxassay_013715_22
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_22
TS23: facial ganglion Strong Regionally restricted euxassay_013715_22
Specimen euxassay_013715_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_23
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_23
TS23: upper leg muscle Moderate Regionally restricted euxassay_013715_23
TS23: lower leg rest of mesenchyme Moderate Regionally restricted euxassay_013715_23
TS23: right lung Strong Regionally restricted euxassay_013715_23
TS23: diaphragm Strong Regionally restricted euxassay_013715_23
TS23: retina Strong Regionally restricted euxassay_013715_23
TS23: cornea epithelium Strong Regionally restricted euxassay_013715_23
TS23: vibrissa Strong Regionally restricted euxassay_013715_23
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013715_23
Specimen euxassay_013715_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_013715_24
TS23: upper arm muscle Strong Regionally restricted euxassay_013715_24
TS23: forearm rest of mesenchyme Strong Regionally restricted euxassay_013715_24
TS23: upper leg muscle Moderate Regionally restricted euxassay_013715_24
TS23: lower leg rest of mesenchyme Moderate Regionally restricted euxassay_013715_24
TS23: right lung Strong Regionally restricted euxassay_013715_24
TS23: diaphragm Strong Regionally restricted euxassay_013715_24
TS23: retina Strong Regionally restricted euxassay_013715_24
TS23: cornea epithelium Strong Regionally restricted euxassay_013715_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory