Gene Expression Data
Assay Details
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Assay
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Reference:
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J:107595
Landsberg RL, et al., Hindbrain rhombic lip is comprised of discrete progenitor cell populations allocated by Pax6. Neuron. 2005 Dec 22;48(6):933-47
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:3639919
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Gene symbol:
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Pou4f1
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Gene name:
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POU domain, class 4, transcription factor 1
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Probe:
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Brn3a probe2
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Probe preparation:
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labelled with digoxigenin RNA
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Results
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Specimen
6I:
embryonic day 12.5
(more  )
Specimen
6I:
(close  )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: brainstem |
Present |
Regionally restricted |
6I
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Expression was detected in the climbing fiber neurons in the intramural migratory stream.
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Specimen
6L:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: brainstem |
Present |
Regionally restricted |
6L
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Expression was increased in the climbing fiber neurons in the intramural migratory stream in the mutant compared to wild type.
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Specimen
6L inset:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Also stained for Neurog1 (Ngn1; assay MGI:3639903).
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: brainstem |
Present |
Regionally restricted |
6L inset
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Expression was detected immediately lateral to that of Neurog1.
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Specimen
6J:
embryonic day 14.5
(more )
Specimen
6J:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 14.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: medulla oblongata |
Present |
Regionally restricted |
6J
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Expression was detected in climbing fiber neurons in the inferior olivary nucleus.
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Specimen
6M:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 14.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: medulla oblongata |
Present |
Regionally restricted |
6M
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Expression was increased in the climbing fiber neurons in the inferior olivary nucleus in the mutant compared to wild type.
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Specimen
6K:
embryonic day 16.5
(more )
Specimen
6K:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 16.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: medulla oblongata |
Present |
Regionally restricted |
6K
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Expression was detected in the climbing fiber neurons in the inferior olivary nucleus.
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Specimen
6N:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 16.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: medulla oblongata |
Present |
Regionally restricted |
6N
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Expression was increased in the climbing fiber neurons in the inferior olivary nucleus in the mutant compared to wild type.
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Specimen
6O:
embryonic day 14.5
(more )
Note: Results were presented in a graph.
Specimen
6O:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 14.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Results were presented in a graph.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: medulla oblongata |
Present |
Regionally restricted |
6O
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Expression was detected in the inferior olivary nucleus.
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Specimen
6O:
embryonic day 14.5; Pax6Sey/ Pax6Sey
(more )
Note: Results were presented in a graph.
Specimen
6O:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 14.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Results were presented in a graph.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: medulla oblongata |
Present |
Regionally restricted |
6O
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Expression was detected in the inferior olivary nucleus (ION) as in wild type, but the area of the ION was increased.
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Analysis Tools