Gene Expression Data
Assay Details
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Assay
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Reference:
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J:107595
Landsberg RL, et al., Hindbrain rhombic lip is comprised of discrete progenitor cell populations allocated by Pax6. Neuron. 2005 Dec 22;48(6):933-47
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:3639903
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Gene symbol:
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Neurog1
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Gene name:
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neurogenin 1
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Probe:
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Ngn1 probe1
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Probe preparation:
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labelled with digoxigenin RNA
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Results
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Specimen
2M:
embryonic day 10.5
(more  )
Specimen
2M:
(close  )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
2M
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Expression was detected in lower rhombic lip progenitor cells.
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Specimen
2N:
embryonic day 11.5
(more )
Specimen
2N:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2N
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Expression was detected in lower rhombic lip progenitor cells.
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Specimen
2O and inset:
embryonic day 12.5
(more )
Note: Inset is a lower magnification view.
Specimen
2O and inset:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Inset is a lower magnification view.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Weak |
Regionally restricted |
2O
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Expression was detected in lower rhombic lip progenitor cells. Expression levels in the lower rhombic lip were diminished compared to the earlier time points, but ventral expression remained robust.
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Specimen
2P:
embryonic day 11.5
(more )
Specimen
2P:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
2W:
embryonic day 11.5
(more )
Specimen
2W:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2W
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Expression in the dorsal hindbrain was detectable caudal but not rostral to the Rhombomere(r)6/r7 boundary.
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Specimen
2X:
embryonic day 11.5
(more )
Specimen
2X:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2X
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Expression in the dorsal hindbrain was detectable caudal but not rostral to the Rhombomere(r)6/r7 boundary.
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Specimen
5C:
embryonic day 10.5
(more )
Specimen
5C:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 10.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
5C
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Expression was detected in lower rhombic lip.
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Specimen
5D:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 10.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
5D
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Expression was detected in lower rhombic lip as in wild type.
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Specimen
5G:
embryonic day 11.5
(more )
Specimen
5G:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
5G
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Expression was detected in lower rhombic lip.
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Specimen
5H:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
5H
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Expression was expanded in lower rhombic lip in mutant compared to wild type.
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Specimen
5K and inset:
embryonic day 12.5
(more )
Note: Inset is a lower magnification view.
Specimen
5K and inset:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Inset is a lower magnification view.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
5K
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Expression was largely absent in lower rhombic lip but was detected in the ventral hindbrain.
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Specimen
5L and inset:
embryonic day 12.5; Pax6Sey/ Pax6Sey
(more )
Note: Inset is a lower magnification view.
Specimen
5L and inset:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Inset is a lower magnification view.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
5L
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Expression was detected in lower rhombic lip in mutant compared to wild type. Expression was detected in ventral hindbrain.
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Specimen
6L inset:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Also stained for Pou4f1 (Brn3a; assay MGI:3639919).
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
6L inset
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Expression was detected in lower rhombic lip.
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Specimen
S1I:
embryonic day 11.5
(more )
Specimen
S1I:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1I
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Expression was detected in lower rhombic lip.
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Specimen
S1K:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1K
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Expression was expanded in lower rhombic lip in mutant compared to wild type.
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Specimen
S1J:
embryonic day 11.5
(more )
Specimen
S1J:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1J
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Expression was detected in lower rhombic lip.
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Specimen
S1L:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 11.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1L
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Expression was expanded in lower rhombic lip in mutant compared to wild type.
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Specimen
S1M:
embryonic day 12.5
(more )
Specimen
S1M:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1M
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Expression was detected in lower rhombic lip but was lower than at E11.5.
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Specimen
S1O:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1O
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Expression was expanded in lower rhombic lip in mutant compared to wild type.
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Specimen
S1N:
embryonic day 12.5
(more )
Specimen
S1N:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1N
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Expression was detected in lower rhombic lip but was lower than at E11.5.
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Specimen
S1P:
(close )
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Genetic Background:
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involves: 129S4/SvJaeSor * C57BL/6J
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1P
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Expression was expanded in lower rhombic lip in mutant compared to wild type.
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