Gene Expression Data
Assay Details
|
Assay
|
|
Reference:
|
J:107595
Landsberg RL, et al., Hindbrain rhombic lip is comprised of discrete progenitor cell populations allocated by Pax6. Neuron. 2005 Dec 22;48(6):933-47
|
|
Assay type:
|
RNA in situ
|
|
MGI Accession ID:
|
MGI:3639900
|
|
Gene symbol:
|
Atoh1
|
|
Gene name:
|
atonal bHLH transcription factor 1
|
|
|
Results
|
Specimen
2I:
embryonic day 10.5
(more  )
Specimen
2I:
(close  )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 10.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
2I
|
Expression was detected in the lower rhombic lip progenitor cells.
|
| TS17: hindbrain mantle layer |
Present |
Regionally restricted |
2I
|
Expression was detected in young progeny neurons.
|
Specimen
2J:
embryonic day 11.5
(more )
Specimen
2J:
(close )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2J
|
Expression was detected in the lower rhombic lip progenitor cells.
|
| TS19: hindbrain mantle layer |
Present |
Regionally restricted |
2J
|
Expression was detected in young progeny neurons.
|
Specimen
2K:
embryonic day 12.5
(more )
Specimen
2K:
(close )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
2K
|
Expression was detected in the lower rhombic lip progenitor cells.
|
| TS20: hindbrain mantle layer |
Present |
Regionally restricted |
2K
|
Expression was detected in young progeny neurons.
|
Specimen
2L:
embryonic day 11.5
(more )
Specimen
2L:
(close )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
Specimen
2U:
embryonic day 11.5
(more )
Specimen
2U:
(close )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2U
|
Expression was detected along the full rostrocaudal axis in the hindbrain.
|
Specimen
2V:
embryonic day 11.5
(more )
Specimen
2V:
(close )
|
Genetic Background:
|
Not Specified
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
2V
|
Expression was detected along the full rostrocaudal axis in the hindbrain.
|
Specimen
5A:
embryonic day 10.5
(more )
Specimen
5A:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 10.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
5A
|
Expression was detected in lower rhombic lip.
|
Specimen
5B:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 10.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS17: hindbrain |
Present |
Regionally restricted |
5B
|
Expression was detected in lower rhombic lip as in wild type.
|
Specimen
5E:
embryonic day 11.5
(more )
Specimen
5E:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
5E
|
Expression was detected in lower rhombic lip.
|
Specimen
5F:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
5F
|
Expression was decreased in lower rhombic lip in the mutant compared to wild type.
|
Specimen
5I:
embryonic day 12.5
(more )
Specimen
5I:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
5I
|
Expression was detected in lower rhombic lip.
|
Specimen
5J:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
|
5J
|
Expression was decreased in lower rhombic lip in the mutant compared to wild type.
|
Specimen
S1A:
embryonic day 11.5
(more )
Specimen
S1A:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1A
|
Expression was detected in lower rhombic lip.
|
Specimen
S1C:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1C
|
Expression was decreased lower rhombic lip in the mutant compared to wild type.
|
Specimen
S1B:
embryonic day 11.5
(more )
Specimen
S1B:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1B
|
Expression was detected in lower rhombic lip.
|
Specimen
S1D:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 11.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Present |
Regionally restricted |
S1D
|
Expression was decreased lower rhombic lip in the mutant compared to wild type.
|
Specimen
S1E:
embryonic day 12.5
(more )
Specimen
S1E:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1E
|
Expression was detected in lower rhombic lip.
|
Specimen
S1G:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1G
|
Expression was decreased lower rhombic lip in the mutant compared to wild type.
|
Specimen
S1F:
embryonic day 12.5
(more )
Specimen
S1F:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1F
|
Expression was detected in lower rhombic lip.
|
Specimen
S1H:
(close )
|
Genetic Background:
|
involves: 129S4/SvJaeSor * C57BL/6J
|
|
Mutant Allele(s):
|
Pax6Sey/Pax6Sey
|
|
Age:
|
embryonic day 12.5
|
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
|
Sex:
|
Not Specified
|
|
Type:
|
section
|
|
Embedding:
|
Cryosection
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
S1H
|
Expression was decreased lower rhombic lip in the mutant compared to wild type.
|
|
Analysis Tools