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Gene Expression Data
Assay Details
Assay
Reference: J:103446 McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
Assay type: RNA in situ
MGI Accession ID: MGI:3618071
Gene symbol: Ppargc1a
Gene name: peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Probe: Ppargc1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The results of this assay were listed in Additional File 3, Ppargc1.
Results
Specimen E13.5: embryonic day 13.5 (more )
Note: Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS21: cerebral cortex Present R1811-11 , R1811-12 Expression was detected in precortical tissue.
TS21: brain ventricular layer Present R1811-11 , R1811-12
TS21: central nervous system ganglion Present R1811-11 , R1811-12
TS21: corpus striatum Present R1811-11 , R1811-12
TS21: hindbrain Present R1811-11 , R1811-12
TS21: olfactory epithelium Present R1811-11 , R1811-12
TS21: spinal cord Present R1811-11 , R1811-12
TS21: retina Ambiguous R1811-11 , R1811-12 Authors indicate that there was either ubiquitous or background expression.
Specimen P0: postnatal day 0 (more )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Structure Level Pattern Image Note
TS27: cerebral cortex Present R1811-21 , R1811-22 , R1811-23
TS27: corpus striatum Present R1811-21 , R1811-22 , R1811-23
TS27: hindbrain Present R1811-21 , R1811-22 , R1811-23
TS27: hippocampus Present R1811-21 , R1811-22 , R1811-23
TS27: hypothalamus Present R1811-21 , R1811-22 , R1811-23
TS27: main olfactory bulb Present R1811-21 , R1811-22 , R1811-23
TS27: midbrain Present R1811-21 , R1811-22 , R1811-23
TS27: olfactory epithelium Present R1811-21 , R1811-22 , R1811-23
TS27: retina Present R1811-21 , R1811-22 , R1811-23
TS27: spinal cord Present R1811-21 , R1811-22 , R1811-23
TS27: thalamus Present R1811-21 , R1811-22 , R1811-23
TS27: trigeminal ganglion Present R1811-21 , R1811-22 , R1811-23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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