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Gene Expression Data
Assay Details
Assay
Reference: J:103446 McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
Assay type: RNA in situ
MGI Accession ID: MGI:3617762
Gene symbol: Alyref
Gene name: Aly/REF export factor
Probe: Refbp1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen Additional File 5A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: brain ventricular layer Present Additonal File 5A
Specimen Additional File 5B: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: lateral ventricle Present Regionally restricted Additonal File 5B Expression was detected in the subventricular area.
Specimen Additional File 5C: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cerebellum external granule cell layer Present Additonal File 5C
Specimen Additional File 5D: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: tooth Present Additonal File 5D
Specimen E13.5: embryonic day 13.5 (more )
Note: Results for this specimen were listed in Additional File 3, row Refbp1. Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS21: cerebral cortex Present R0212-12 , R0212-11 Expression was detected in precortical tissue.
TS21: brain ventricular layer Present R0212-11 , R0212-12
TS21: central nervous system ganglion Present R0212-11 , R0212-12
TS21: corpus striatum Present R0212-11 , R0212-12
TS21: hindbrain Present R0212-11 , R0212-12
TS21: olfactory epithelium Present R0212-11 , R0212-12
TS21: retina Present R0212-11 , R0212-12
TS21: spinal cord Present R0212-11 , R0212-12
Specimen P0: postnatal day 0 (more )
Note: Results for this specimen were listed in Additional File 3, row Refbp1. Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS27: cerebral cortex Present R0212-22 , R0212-21
TS27: corpus striatum Present R0212-22 , R0212-21
TS27: hindbrain Present R0212-22 , R0212-21
TS27: hippocampus Present R0212-22 , R0212-21
TS27: hypothalamus Present R0212-22 , R0212-21
TS27: main olfactory bulb Present R0212-22 , R0212-21
TS27: olfactory epithelium Present R0212-22 , R0212-21
TS27: retina Present R0212-22 , R0212-21
TS27: thalamus Present R0212-22 , R0212-21
TS27: thymus Present R0212-22 , R0212-21
TS27: tooth Present R0212-22 , R0212-21
TS27: trigeminal ganglion Present R0212-22 , R0212-21
TS27: midbrain Ambiguous R0212-21 , R0212-22 Authors indicate that there was either ubiquitous or background expression.
TS27: spinal cord Absent R0212-21 , R0212-22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/28/2024
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