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Gene Expression Data
Assay Details
Assay
Reference: J:32072 Ruberte E, et al., Retinoic acid receptors and cellular retinoid binding proteins. II. Their differential pattern of transcription during early morphogenesis in mouse embryos. Development. 1991 Jan;111(1):45-60
Assay type: RNA in situ
MGI Accession ID: MGI:1934379
Gene symbol: Rara
Gene name: retinoic acid receptor, alpha
Probe: RAR-alpha-cDNA4
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen not shown: embryonic day 7.5-8.0 (more )
Note: Presomite stage.
Structure Level Pattern Image Note
TS11: embryo Ambiguous Authors state that signal was diffuse, indicating either very low levels of expression or background of hybridization.

Specimen not shown: embryonic day 8.0 (more )
Note: 4 to 7 somites.
Structure Level Pattern Image Note
TS12: embryo Present Regionally restricted Authors report slightly higher signal in epiblast and mesoderm of primitive streak than in the rest of the embryo.
TS12: primitive streak Present

Specimen 5A: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: future prosencephalon Present 5A RAR-alpha Transcripts in the neural epithelium of the forebrain.
TS13: head mesenchyme derived from neural crest Present 5A RAR-alpha Expression in neural crest cells of the frontonasal and first pharyngeal arch regions.
TS13: migrating neural crest Weak 5A RAR-alpha

Specimen 5B: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: head mesenchyme derived from neural crest Present 5B RAR-alpha Expression in neural crest cells of the frontonasal and first pharyngeal arch regions.
TS13: migrating neural crest Weak 5B RAR-alpha

Specimen 5C: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: future hindbrain Present Regionally restricted 5C RAR-alpha Transcripts at the level caudal to the pre-otic sulcus; strongest in lateral neural epithelium from which neural crest cells were emigrating, and in crest cells themselves.
TS13: migrating neural crest Present 5C RAR-alpha

Specimen 6A: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: embryo Present 6A RAR-alpha Transcripts were almost ubiquitously expressed.
TS14: branchial arch mesenchyme Weak Regionally restricted 6A RAR-alpha Lower intensity in frontonasal and pharyngeal arch mesenchyme.
TS14: head mesenchyme Weak Regionally restricted 6A RAR-alpha Lower intensity in frontonasal and pharyngeal arch mesenchyme.

Specimen 6B: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: embryo Present 6B RAR-alpha Transcripts were almost ubiquitously expressed.
TS14: migrating neural crest Present Regionally restricted 6B RAR-alpha Presumed neural crest cells were most strongly labelled in hindbrain levels from which neural crest cells were emigrating.
TS14: branchial arch mesenchyme Present Regionally restricted 6B RAR-alpha Lower intensity in frontonasal and pharyngeal arch mesenchyme.
TS14: head mesenchyme Present Regionally restricted 6B RAR-alpha Lower intensity in frontonasal and pharyngeal arch mesenchyme.

Specimen 6C: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: embryo Present 6C RAR-alpha Transcripts were almost ubiquitously expressed.
TS14: mesenchyme derived from head mesoderm Ambiguous 6C RAR-alpha Authors report little or no expression in cranial primary mesenchyme or in occipital somites.
TS14: head somite Ambiguous 6C RAR-alpha Authors report little or no expression in cranial primary mesenchyme or in occipital somites.

Specimen 8A: embryonic day 9.0 (more )
Note: 18 to 20 somites.
Structure Level Pattern Image Note
TS14: embryo Present Regionally restricted 8A RAR-alpha Authors state that the pattern of expression was not very different from that seen previoiusly.
TS14: head mesenchyme derived from neural crest Present 8A RAR-alpha Higher levels of transcripts in neural crest-derived cells.
TS14: mesenchyme derived from head mesoderm Present 8A RAR-alpha Higher levels of transcripts in neural crest-derived cells.
TS14: 1st branchial arch mandibular component Present Regionally restricted 8A RAR-alpha Expression in a ring of frontonasal mesenchyme around the forebrain vesicle.
TS14: neural tube Present Regionally restricted 8A RAR-alpha Higher levels of trancripts in outer cells of neural tube (ie. the newly forming mantle layer, containing neuroblasts).
TS14: heart Absent 8A RAR-alpha
TS14: limb Present Regionally restricted 8A RAR-alpha Transcripts in all mesodermal components of the limb.

Specimen not shown: embryonic day 9.0 (more )
Note: 18 to 20 somites.
Structure Level Pattern Image Note
TS14: future hindbrain Present Regionally restricted Anterior limit of expression at the rhombomere 3/4 boundary.
TS14: trunk mesenchyme Present Regionally restricted Transcripts in all mesodermal components of the trunk, except for the heart.


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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory