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Gene Expression Data
Assay Details
Assay
Reference: J:49163 Kanzler B, et al., Hoxa-2 restricts the chondrogenic domain and inhibits bone formation during development of the branchial area. Development. 1998 Jul;125(14):2587-97
Assay type: RNA in situ
MGI Accession ID: MGI:1327563
Gene symbol: Sox9
Gene name: SRY (sex determining region Y)-box 9
Probe: Sox9 cDNA3
Probe preparation: Antisense labelled with radioactivity RNA
Results
Specimen 1E: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: middle ear mesenchyme Present Regionally restricted 1E Expressed in the condensation surrounding the stapedial artery.

Specimen 1H: embryonic day 12.75 (more )
Structure Level Pattern Image Note
TS20: middle ear mesenchyme Present Regionally restricted 1H Expressed in the condensation surrounding the stapedial artery.

Specimen 1K: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: stapes pre-cartilage condensation Present 1K
TS21: otic capsule Present 1K Expressed in the otic capsule, but not in the oval window.

Specimen 1N: embryonic day 12.75 (more )
Structure Level Pattern Image Note
TS20: temporal bone petrous part Present Regionally restricted 1N Expressed in the developing styloid process.

Specimen 3C/D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: 2nd branchial arch Present Regionally restricted 3D , 3B/C Expression is restricted to a central area in the branchial arch, and in the dorsal part shows a perforated appearance in the stapedial condensation, which lies in close proximity to the otic vesicle.

Specimen 3G/H: embryonic day 11.5; Hoxa2tm1Grid/Hoxa2tm1Grid (more )
Structure Level Pattern Image Note
TS19: 2nd branchial arch Present Regionally restricted 3F/G , 3H The altered expression was particularly evident in the dorsal part, where it was no longer close to the otic vesicle but more ventrally located, adjacent to the first pharyngeal pouch.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory