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Gene Expression Data
Assay Details
Assay
Reference: J:16971 Barnes JD, et al., Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1, suggests a role in lateral mesoderm differentiation and neurogenesis. Dev Biol. 1994 Jan;161(1):168-78
Assay type: RNA in situ
MGI Accession ID: MGI:1270220
Gene symbol: Lhx1
Gene name: LIM homeobox protein 1
Probe: Lhx1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 5A: embryonic day 6.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS9: primitive streak Present Graded 5A Expression is highest an anterior limit of primitive straek.
Specimen 5B: embryonic day 7.0 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS10: node Present 5B
TS10: embryo mesoderm Weak 5B
TS10: primitive streak Weak 5B
Specimen 5C: embryonic day 7.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS11: embryo mesoderm Present 5C
TS11: node Present 5C
TS11: notochordal plate Present 5C
TS11: notochordal process Present 5C
TS11: primitive streak Present 5C
Specimen 5D: embryonic day 6.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS9: embryo mesoderm Present Regionally restricted 5D Expression is present in the mesoderm of the primitive streak but not in the endoderm.
TS9: primitive streak Present Regionally restricted 5D Expression is present in the mesoderm of the primitive streak but not in the endoderm.
TS9: embryo endoderm Absent 5D
Specimen 6A: embryonic day 7.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 6A Expression is limited to the very posterior of the node and the lateral/intermediate mesoderm.
TS11: node Present Regionally restricted 6A Expression is limited to the very posterior of the node and the lateral/intermediate mesoderm.
Specimen 6B: embryonic day 8.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS13: intermediate mesenchyme Present 6B Expression is limited to the intermediate mesoderm.
TS13: lateral plate mesoderm Present 6B Expression is limited to the intermediate mesoderm.
TS13: notochord Absent 6B Text states that no expression is seen in the node or notochord.
Specimen 6C: embryonic day 9.0 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS14: nephrogenic cord Present Regionally restricted 6C
Specimen 6D: embryonic day 9.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS15: mesonephros Present Regionally restricted 6D right Strongest expression posterior to somite 17.
TS15: nephric duct Present Regionally restricted 6D right Strongest expression posterior to somite 17.
TS15: diencephalon Weak 6D right
Specimen 6E: embryonic day 10.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS17: diencephalon Present 6E
TS17: future spinal cord Present 6E
TS17: hindbrain Present 6E
TS17: mesonephros Present 6E
TS17: nephric duct Present 6E
Specimen 6F: embryonic day 10.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 6F Expression in spinal cord is limited to dorsal spinal cord.
TS17: future spinal cord Present Regionally restricted 6F Expression in spinal cord is limited to dorsal spinal cord.
TS17: hindbrain Present Regionally restricted 6F Expression in spinal cord is limited to dorsal spinal cord.
Specimen 6G: embryonic day 9.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS15: nephric duct Present 6G Expression is restricted to the mesonephric duct.
Specimen 6H: embryonic day 10.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 6H Expression is limited to lateral diencephalon.
Specimen 6I: embryonic day 10.5 (more )
Note: Specimen was fixed in 0.2% glutaraldehyde/4% paraformaldehyde.
Structure Level Pattern Image Note
TS17: future spinal cord Present Regionally restricted 6I Expression is limited to the commissural neurons.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/30/2025
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