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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Hoxa1+
wild type
MGI:1857825
Summary 4 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
ht1
Hoxa1tm1Mrc/Hoxa1+ involves: 129S7/SvEvBrd * C57BL/6J MGI:2177820
cx2
Hoxa1tm2Mrc/Hoxa1+
Hoxa2tm1Mrc/Hoxa2tm1Mrc
involves: 129S1/Sv * 129X1/SvJ MGI:3043810
cx3
Hoxa1tm2Mrc/Hoxa1+
Hoxa2tm1Mrc/Hoxa2+
involves: 129S1/Sv * 129X1/SvJ MGI:3043811
cx4
Hoxa1tm5Mrc/Hoxa1+
Hoxb1tm5Mrc/Hoxb1tm5Mrc
involves: 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:3703018


Genotype
MGI:2177820
ht1
Allelic
Composition
Hoxa1tm1Mrc/Hoxa1+
Genetic
Background
involves: 129S7/SvEvBrd * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa1tm1Mrc mutation (0 available); any Hoxa1 mutation (15 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
normal phenotype
• no obvious phenotype




Genotype
MGI:3043810
cx2
Allelic
Composition
Hoxa1tm2Mrc/Hoxa1+
Hoxa2tm1Mrc/Hoxa2tm1Mrc
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa1tm2Mrc mutation (0 available); any Hoxa1 mutation (15 available)
Hoxa2tm1Mrc mutation (0 available); any Hoxa2 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• die shortly after birth of dehydration

behavior/neurological
• unable to suckle

craniofacial
• extent of cleft secondary palate not as great with decreased functional Hoxa1

digestive/alimentary system
• extent of cleft secondary palate not as great with decreased functional Hoxa1

growth/size/body
• extent of cleft secondary palate not as great with decreased functional Hoxa1




Genotype
MGI:3043811
cx3
Allelic
Composition
Hoxa1tm2Mrc/Hoxa1+
Hoxa2tm1Mrc/Hoxa2+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa1tm2Mrc mutation (0 available); any Hoxa1 mutation (15 available)
Hoxa2tm1Mrc mutation (0 available); any Hoxa2 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
normal phenotype
• viable and fertile




Genotype
MGI:3703018
cx4
Allelic
Composition
Hoxa1tm5Mrc/Hoxa1+
Hoxb1tm5Mrc/Hoxb1tm5Mrc
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa1tm5Mrc mutation (0 available); any Hoxa1 mutation (15 available)
Hoxb1tm5Mrc mutation (0 available); any Hoxb1 mutation (24 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
behavior/neurological
• 17% of mice have a noticeably narrower range of whisker movements on one side
• 8% have a mutant-like eyelid closure reflex in one eye
• some facial motor hypomorphism is observed; Hoxa1 haploinsufficiency is observed

nervous system
• haploinsufficient presumptive facial nuclei are smaller, rounder, and located more internally than wild-type
• zygomatic and temporal branches of facial nerve in affected mutants are thinner and sometimes atypically formed, but rarely missing





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last database update
01/20/2026
MGI 6.24
The Jackson Laboratory