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Gene Expression Data
Assay Details
Assay
Reference: J:309436 Parish EV, et al., Expression of Barhl2 and its relationship with Pax6 expression in the forebrain of the mouse embryo. BMC Neurosci. 2016 Nov 25;17(1):76
Assay type: RNA in situ
MGI Accession ID: MGI:7461464
Gene symbol: Pax6
Gene name: paired box 6
Probe: Pax6 cDNA16
Probe preparation: Antisense labelled with fluorescein RNA
Visualized with: Fluorescence
Results
Specimen 4A/C: embryonic day 9.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 4A , 4C Expressed throughout alar diencephalon.
TS15: future midbrain Present 4C , 4A
TS15: telencephalon Present 4C , 4A
Specimen 4D/F: embryonic day 10.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 4D , 4F Expressed in the prethalamus and thalamus, but was absent from the zona limitans intrathalamica.
TS17: forebrain-midbrain boundary region Present Regionally restricted 4F , 4D Expressed in the pretectum.
TS17: telencephalon Present 4D , 4F
Specimen 4G/I: embryonic day 11.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS19: diencephalon Present Regionally restricted 4I , 4G Expressed in the region of progenitor cells (pTh-C domain) in the thalamic ventricular zone. Expression remained low or absent in the narrow strip of progenitor cells (pTh-R) caudal to the zona limitans intrathalamica. No expression in zona limitans intrathalamica.
TS19: prethalamus Present 4I , 4G
TS19: forebrain-midbrain boundary region Present Regionally restricted 4I , 4G Expressed in the pretectum.
Specimen 4J/L: embryonic day 12.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS20: prethalamus Present 4L , 4J
Specimen 4M/O: embryonic day 13.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS21: prethalamus Present 4O , 4M
Specimen 5A/B/D: embryonic day 9.5 (more )
Note: Double labeled: green - Pax6; magenta - Barhl2 (assay MGI:7461456).
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 5D , 5B , 5A Expressed in the nucleus in the presumptive zona limitans intrathalamica, and also in the region of prethalamic neuroepithelium (all cells) directly rostral to it. Many cells in this region co-expressed Barhl2.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory