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Gene Expression Data
Assay Details
Assay
Reference: J:247900 Downs KM, Systematic localization of Oct-3/4 to the gastrulating mouse conceptus suggests manifold roles in mammalian development. Dev Dyn. 2008 Feb;237(2):464-75
Assay type: Immunohistochemistry
MGI Accession ID: MGI:6114698
Gene symbol: Pou5f1
Gene name: POU domain, class 5, transcription factor 1
Antibody: anti-Oct4 (N-19; sc-8628)
Detection system: Biotinylated secondary antibody/[Strept]avidin coupled to horseradish peroxidase
Results
Specimen 1A: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: embryo Present 1A

Specimen 1B: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: surface ectoderm Present 1B
TS12: neural ectoderm Present Regionally restricted 1B Expression is in the anterior neurectoderm.

Specimen 1C: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: surface ectoderm Present 1C
TS12: neural ectoderm Present Regionally restricted 1C Expression is in the anterior neurectoderm.

Specimen 1F: embryonic day 8.0-8.25 (more )
Note: 2 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present 1F

Specimen 1G: embryonic day 8.0-8.25 (more )
Note: 2 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present 1G

Specimen 1H: embryonic day 8.0-8.25 (more )
Note: 2 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present 1H

Specimen 1I: embryonic day 8.0-8.25 (more )
Note: 2 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present 1I

Specimen 2A: embryonic day 6.75-7.0 (more )
Note: Midstreak stage embryo.
Structure Level Pattern Image Note
TS10: embryo mesoderm Present 2A
TS10: extraembryonic mesoderm Present 2A
TS10: primitive streak Present 2A
TS10: embryo Present Regionally restricted 2A Expression is in the epiblast.
TS10: primitive endoderm Present Regionally restricted 2A Expression extended circumferentially around the egg cylinder from the anterior level of the primitive streak to the distal tip of the egg cylinder.
TS10: extraembryonic component Present Regionally restricted 2A Aside from the exraembryonic mesoderm all other extraembryonic tissues had no expression.
TS10: extraembryonic ectoderm Absent 2A
TS10: extraembryonic endoderm Absent 2A

Specimen 2B: embryonic day 6.75-7.0 (more )
Note: Midstreak stage embryo.
Structure Level Pattern Image Note
TS10: embryo mesoderm Present 2B
TS10: extraembryonic mesoderm Present 2B
TS10: primitive streak Present 2B
TS10: embryo Present Regionally restricted 2B Expression is in the epiblast.
TS10: primitive endoderm Present Regionally restricted 2B Expression extended circumferentially around the egg cylinder from the anterior level of the primitive streak to the distal tip of the egg cylinder.
TS10: extraembryonic component Present Regionally restricted 2B Aside from the exraembryonic mesoderm all other extraembryonic tissues had no expression.
TS10: extraembryonic ectoderm Absent 2B
TS10: extraembryonic endoderm Absent 2B

Specimen 2C: embryonic day 6.75-7.0 (more )
Note: Midstreak stage embryo.
Structure Level Pattern Image Note
TS10: embryo mesoderm Present 2C
TS10: extraembryonic mesoderm Present 2C
TS10: primitive streak Present 2C
TS10: embryo Present Regionally restricted 2C Expression is in the epiblast.
TS10: primitive endoderm Present Regionally restricted 2C Expression extended circumferentially around the egg cylinder from the anterior level of the primitive streak to the distal tip of the egg cylinder.
TS10: extraembryonic component Present Regionally restricted 2C Aside from the exraembryonic mesoderm all other extraembryonic tissues had no expression.
TS10: extraembryonic ectoderm Absent 2C
TS10: extraembryonic endoderm Absent 2C

Specimen 2D: embryonic day 7.0 (more )
Note: Late streak stage embryo.
Structure Level Pattern Image Note
TS10: embryo mesoderm Present 2D
TS10: extraembryonic mesoderm Present 2D
TS10: node Present 2D
TS10: primitive streak Present 2D
TS10: embryo Present Regionally restricted 2D Expression is in the epiblast.
TS10: primitive endoderm Present Regionally restricted 2D Positive cells are associated with the full circumference of paraxial and lateral plate mesoderm.
TS10: extraembryonic component Present Regionally restricted 2D Aside from the exraembryonic mesoderm all other extraembryonic tissues had no expression.
TS10: extraembryonic ectoderm Absent 2D
TS10: extraembryonic endoderm Absent 2D

Specimen 2E: embryonic day 7.0-7.25 (more )
Note: No allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: notochordal process Very strong 2E
TS11: embryo mesenchyme Very strong Regionally restricted 2E Expression is in nascent prospective paraxial mesoderm.
TS11: lateral plate mesoderm Very strong Regionally restricted 2E Expression is in the posterior lateral plate mesoderm. The anterior half varied from slightly positive to negative in expression.
TS11: primitive endoderm Present Regionally restricted 2E Expression is in cells overlying prospective paraxial and lateral plate mesoderm.
TS11: node Present 2E

Specimen 2F: embryonic day 7.0-7.25 (more )
Note: No allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: embryo mesenchyme Very strong Regionally restricted 2F Expression is in nascent prospective paraxial mesoderm.
TS11: lateral plate mesoderm Very strong Regionally restricted 2F Expression is in the posterior lateral plate mesoderm.

Specimen 2G: embryonic day 7.0-7.25 (more )
Note: No allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: amnion ectoderm Present 2G
TS11: exocoelomic cavity Present Regionally restricted 2G Expression is in mesoderm cells lining the nascent exocoelom.
TS11: mesoderm Present Regionally restricted 2G Expression is in mesoderm cells lining the nascent exocoelom.
TS11: extraembryonic endoderm Absent 2G

Specimen 2H: embryonic day 7.25-7.5 (more )
Note: Early allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: node Strong 2H
TS11: primitive streak Strong 2H
TS11: notochordal process Present Regionally restricted 2H Expression is reduced to absent anteriorly.

Specimen 2I: embryonic day 7.25-7.5 (more )
Note: Late allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: primitive endoderm Present Regionally restricted 2I Expression is in cells overlying prospective paraxial and lateral plate mesoderm and associated with the posterior primitive streak.
TS11: neural plate Present 2I
TS11: notochordal process Present 2I
TS11: embryo mesenchyme Strong Regionally restricted 2I Expression is in the paraxial mesoderm.

Specimen 2J: embryonic day 7.25-7.5 (more )
Note: Late allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: primitive endoderm Present Regionally restricted 2J Expression is in cells overlying prospective paraxial and lateral plate mesoderm.
TS11: notochordal process Present 2J
TS11: lateral plate mesoderm Present Uniform 2J

Specimen 3A: embryonic day 7.25-7.5 (more )
Note: Early allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: exocoelomic cavity Present Regionally restricted 3A Expression is in mesoderm cells lining the exocoelom.
TS11: extraembryonic mesoderm Present Regionally restricted 3A Expression is in mesoderm cells lining the exocoelom.
TS11: allantois Present Regionally restricted 3A Expression is in the inner and outer allantoic cell population.
TS11: amnion ectoderm Present 3A
TS11: blood island Absent 3A
TS11: extraembryonic visceral endoderm Absent 3A Expression is absent in the allantois-associated extraembryonic visceral endoderm.

Specimen 3B: embryonic day 7.25-7.5 (more )
Note: Late allantoic bud stage embryo.
Structure Level Pattern Image Note
TS11: exocoelomic cavity Present Regionally restricted 3B Expression is in mesoderm cells lining the exocoelom.
TS11: extraembryonic mesoderm Present Regionally restricted 3B Expression is in mesoderm cells lining the exocoelom.
TS11: allantois Present Regionally restricted 3B Expression is in the inner and outer allantoic cell population.
TS11: amnion ectoderm Present 3B
TS11: blood island Absent 3B
TS11: extraembryonic visceral endoderm Absent 3B Expression is absent in the allantois-associated extraembryonic visceral endoderm.

Specimen 3C: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: allantois Present Regionally restricted 3C Expression is in the inner and occasionally outer associated cells of the allantois.
TS12: extraembryonic visceral endoderm Present Regionally restricted 3C Expression is in the allantois-associated extraembryonic visceral endoderm.
TS12: primitive endoderm Present Regionally restricted 3C Expression is in the endoderm overlying the posterior primitive streak.
TS12: amnion ectoderm Present 3C

Specimen 3D: embryonic day 8.0-8.25 (more )
Note: 1 somite stage embryo.
Structure Level Pattern Image Note
TS12: allantois Present Regionally restricted 3D The expression domain is symmetric about the allantois' putative A-P axis, but asymmetric with respect to its dorsalventral (D-V) axis.
TS12: amnion ectoderm Present 3D
TS12: extraembryonic visceral endoderm Present Regionally restricted 3D Expression is in the allantis-associated extraembryonic visceral endoderm.

Specimen 3E: embryonic day 8.25-8.5 (more )
Note: 5 somite stage embryo.
Structure Level Pattern Image Note
TS13: allantois Present 3E
TS13: extraembryonic endoderm Present Regionally restricted 3E Expression is in the allantis-associated extraembryonic visceral endoderm.
TS13: alimentary system endoderm Present Regionally restricted 3E Expression is in the embryonic visceral endoderm overlying the hindgut.
TS13: primitive hindgut Present Regionally restricted 3E Expression is in nascent hindgut endoderm located beneath the allantois.
TS13: amnion ectoderm Present 3E

Specimen 3F: embryonic day 8.25-8.5 (more )
Note: 5 somite stage embryo.
Structure Level Pattern Image Note
TS13: extraembryonic endoderm Present Regionally restricted 3F Expression is in the allantis-associated extraembryonic visceral endoderm.
TS13: allantois Present 3F
TS13: amnion ectoderm Present 3F
TS13: umbilical blood vessel Present 3F

Specimen 3G: embryonic day 8.0-8.25; Kdrtm1Jrt/Kdrtm1Jrt (more )
Note: 2 somite stage embryo. Double labeled: brown - Pou5f1; blue - Kdr reporter (assay MGI:6116839).
Structure Level Pattern Image Note
TS12: allantois Present 3G
TS12: extraembryonic visceral endoderm Present Regionally restricted 3G Expression is in the allantis-associated extraembryonic visceral endoderm.

Specimen 3H: embryonic day 8.0-8.25; Kdrtm1Jrt/Kdrtm1Jrt (more )
Note: 2 somite stage embryo. Double labeled: brown - Pou5f1; blue - Kdr reporter (assay MGI:6116839).
Structure Level Pattern Image Note
TS12: allantois Present 3H

Specimen 3I: embryonic day 8.0-8.25; Kdrtm1Jrt/Kdrtm1Jrt (more )
Note: 2 somite stage embryo. Double labeled: brown - Pou5f1; blue - Kdr reporter (assay MGI:6116839).
Structure Level Pattern Image Note
TS12: allantois Present 3I

Specimen 3J: embryonic day 8.0-8.25; Kdrtm1Jrt/Kdrtm1Jrt (more )
Note: 2 somite stage embryo. Double labeled: brown - Pou5f1; blue - Kdr reporter (assay MGI:6116839).
Structure Level Pattern Image Note
TS12: allantois Present 3J

Specimen 5A: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: node Present Regionally restricted 5A Expression is absent in the ventral anterior aspect.
TS12: embryo Present Regionally restricted 5A Expression is in the posterior half.
TS12: posterior visceral endoderm Present Regionally restricted 5A Expression is in the posterior half.
TS12: primitive streak Present Regionally restricted 5A Expression is in the posterior primitive streak.

Specimen 5B: embryonic day 7.75-8.0 (more )
Note: Early headfold stage embryo.
Structure Level Pattern Image Note
TS12: node Present Regionally restricted 5B Expression is absent in the ventral anterior aspect.
TS12: embryo Present Regionally restricted 5B Expression is in the posterior half.
TS12: posterior visceral endoderm Present Regionally restricted 5B Expression is in the posterior half.
TS12: primitive streak Present Regionally restricted 5B Expression is in the posterior primitive streak.

Specimen 5C: embryonic day 8.0-8.25 (more )
Note: 1 somite stage embryo.
Structure Level Pattern Image Note
TS12: node Present Regionally restricted 5C Expression is absent in the ventral anterior aspect.

Specimen 5D: embryonic day 8.25-8.5 (more )
Note: 5 somite stage embryo.
Structure Level Pattern Image Note
TS13: node Present Regionally restricted 5D Expression is dorsal and absent in the ventral node.

Specimen 5E: embryonic day 8.25 (more )
Note: 4 somite stage embryo.
Structure Level Pattern Image Note
TS12: node Present Regionally restricted 5E Expression is dorsal and absent in the ventral node.

Specimen 5F: embryonic day 8.25 (more )
Note: 4 somite stage embryo.
Structure Level Pattern Image Note
TS12: node Present Regionally restricted 5F Expression is dorsal and absent in the ventral node.
TS12: primitive endoderm Present Regionally restricted 5F Expression is in the endoderm adjacent to the node.

Specimen 5G: embryonic day 8.25 (more )
Note: 4 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive endoderm Strong Regionally restricted 5G Expression is in the endoderm adjacent to the node.
TS12: node Present 5G

Specimen 5H: embryonic day 8.25 (more )
Note: 4 somite stage embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present 5H
TS12: primitive endoderm Present Regionally restricted 5H Expression is in the endoderm adjacent to the primitive streak.

Specimen 6A: embryonic day 8.25-8.5 (more )
Note: 5 somite stage embryo.
Structure Level Pattern Image Note
TS13: allantois Strong 6A
TS13: amnion Strong 6A
TS13: neural ectoderm Strong 6A
TS13: embryo Strong Regionally restricted 6A Expression is in posterior structures.
TS13: extraembryonic endoderm Present Regionally restricted 6A Expression is in cells in the allantis-associated extraembryonic visceral endoderm overlying the primary umbilical vessel.
TS13: somite Present Regionally restricted 6A Expression in each somite decreased in a rostral-caudal gradient.
TS13: heart Absent 6A

Specimen 6B: embryonic day 8.25-8.5 (more )
Note: 5 somite stage embryo.
Structure Level Pattern Image Note
TS13: somite Present 6B Expression is stronger in the most recently formed posterior somite.

Specimen 6C: embryonic day 8.5-8.75 (more )
Note: 6 somite stage embryo.
Structure Level Pattern Image Note
TS14: neural ectoderm Present 6C Expression is stronger in the posterior neurectoderm.

Specimen 6D: embryonic day 8.5-8.75 (more )
Note: 7 somite stage embryo.
Structure Level Pattern Image Note
TS14: neural ectoderm Present 6D Expression is strong in the posterior neurectoderm and weak in the anterior neurectoderm.
TS14: primitive hindgut Present Regionally restricted 6D Expressing cells are in the ventral region.

Specimen 6E: embryonic day 8.5-8.75 (more )
Note: 8 somite stage embryo.
Structure Level Pattern Image Note
TS14: primordial germ cell of hindgut Present 6E Expressing cells are in the ventral region of the hindgut.
TS14: embryo Present Regionally restricted 6E There is a near global extinction of expression.

Specimen 6F: embryonic day 8.75-9.25 (more )
Note: 10 somite stage embryo.
Structure Level Pattern Image Note
TS14: primordial germ cell of hindgut Present 6F
TS14: surface ectoderm Present Single cells 6F
TS14: allantois Present Clusters 6F

Specimen 6G: embryonic day 8.75-9.25 (more )
Note: 10 somite stage embryo.
Structure Level Pattern Image Note
TS14: primordial germ cell of hindgut Present Clusters 6G

Specimen 6H: embryonic day 8.75-9.25 (more )
Note: 16 somite stage embryo.
Structure Level Pattern Image Note
TS14: allantois Present Clusters 6H


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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory