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Gene Expression Data
Assay Details
Assay
Reference: J:66532 Hecksher-Sorensen J, et al., 3D confocal reconstruction of gene expression in mouse. Mech Dev. 2001 Jan;100(1):59-63
Assay type: RNA in situ
MGI Accession ID: MGI:5903522
Gene symbol: Shh
Gene name: sonic hedgehog
Results
Specimen 1a: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube floor plate Strong 1a
Specimen 1e: embryonic day 9.5 (more )
Note: Double labeled: red - Shh; green - Pdx1 (assay MGI:5903521).
Structure Level Pattern Image Note
TS15: pancreas primordium dorsal bud Absent 1e Expression excluded from pancreatic bud.
TS15: gut endoderm Present Regionally restricted 1e
Specimen 2b 15um: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 2b 15um
TS16: notochord Present 2b 15um
Specimen 2b 29um: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 2b 29um
TS16: notochord Present 2b 29um
Specimen 2b 38um: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 2b 38um
TS16: notochord Present 2b 38um
Specimen 2b 47um: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: notochord Present 2b 47um
Specimen 2c: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 2c
TS16: notochord Present 2c
Specimen 2d: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 2d
Specimen 2e: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: notochord Present 2e
Specimen 3b,3g: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: floor plate Present 3b , 3g
TS15: gut Present 3b , 3g
Specimen 3c: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: floor plate Present 3c
TS15: gut Present 3c
Specimen 3d: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: floor plate Present 3d
Specimen 3e: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: floor plate Present 3e
TS15: gut Present 3e
Specimen 3f: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: floor plate Present 3f
TS15: foregut Present Regionally restricted 3f Expression in gut including stomach.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory